View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_36 (Length: 266)
Name: NF1457_1D_low_36
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 16468686 - 16468444
Alignment:
| Q |
24 |
gaccttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaattcagattctaatagtggtgatccatca |
123 |
Q |
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| T |
16468686 |
gaccttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaattcagattctaatagtggtgatccatca |
16468587 |
T |
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| Q |
124 |
ttcataacatgagaaatttaagattaacattagtgttaatattaatagtaatggtgctggtttttgctctcatgttatatgaaaaataaaatttatgggt |
223 |
Q |
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| T |
16468586 |
ttcataacatgagaaatttaagattaacattagtgttaatattaatagttatggtgctggtttttgctctcatgttatatgaaaaataaaatttatgcgt |
16468487 |
T |
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| Q |
224 |
gtgccatttatttgagaattttcacgtagtcagcacttagtaa |
266 |
Q |
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| T |
16468486 |
gtgccatttgtttgagaattttcacgtagtcagcacttagtaa |
16468444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 14319613 - 14319764
Alignment:
| Q |
23 |
agaccttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaatt----cagattctaatagtggtgatc |
118 |
Q |
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| T |
14319613 |
agaccttaattgattcttcaacacgtgtttggtgattcttcaagacagtgagagcgattcacaagaagattaattagaacattttctaatagtggtgatt |
14319712 |
T |
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| Q |
119 |
catcattcataacatgagaaatttaagattaacattagtgttaatattaata |
170 |
Q |
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| T |
14319713 |
catcgttcaaaacaggagaaatttaaggataacaatagtattaatattaata |
14319764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 14301822 - 14301969
Alignment:
| Q |
23 |
agaccttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaattcagattctaatagtggtgatccatc |
122 |
Q |
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| T |
14301822 |
agaccttaatcgattcttcaacacctgtttggtaattcttcaagacagtgagagcgattcacaagaagattaaaacaggttctaatagtggcgattcatc |
14301921 |
T |
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| Q |
123 |
attcataacatgagaaatttaagattaacattagtgttaatattaata |
170 |
Q |
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| T |
14301922 |
gttcagaacaggagaacttcaaggataaaaatagtgttaatattaata |
14301969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 16731796 - 16731861
Alignment:
| Q |
129 |
aacatgagaaatttaagattaacattagtgttaatattaatagtaatggtgctggtttttgctctc |
194 |
Q |
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| T |
16731796 |
aacatgagacatttagaaataacaatagtgttaatattaataatgatggtgaaggtttttgctctc |
16731861 |
T |
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