View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_4 (Length: 428)
Name: NF1457_1D_low_4
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 25 - 417
Target Start/End: Original strand, 37162923 - 37163315
Alignment:
| Q |
25 |
gtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttag |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162923 |
gtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttag |
37163022 |
T |
|
| Q |
125 |
taacttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttctt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163023 |
taacttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttctt |
37163122 |
T |
|
| Q |
225 |
gaactttccactaccatctttagccacaaccacattagccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcacca |
324 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163123 |
aaactttccactaccatctttagccacaaccacattagccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcacca |
37163222 |
T |
|
| Q |
325 |
acccaagaaggaacatcattaacatcatctttagcaacaacttgttcacccacatactcgcccttataatcatcaataagttgatgtccatct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
37163223 |
acccaagaaggaacatcattaacatcatctttagcaacaacttgttcacccacatactcgcccttataatcatcaataagacgacgtccatct |
37163315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 37150325 - 37150213
Alignment:
| Q |
28 |
tggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcat-tttcttagta |
126 |
Q |
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| T |
37150325 |
tggtaagtcgtaactccatccataaagtttttgttgccggtgattattgacttcttaccaccatcaccaacaaacacaatatgtgtcatatttgtta-aa |
37150227 |
T |
|
| Q |
127 |
acttcaacatactc |
140 |
Q |
| |
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|||||||||||||| |
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| T |
37150226 |
acttcaacatactc |
37150213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 37159150 - 37159038
Alignment:
| Q |
28 |
tggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcat-tttcttagta |
126 |
Q |
| |
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|||||||| ||| |||||| ||||| ||||||||||| || ||| ||| ||| || ||||||||||| | |||||||| ||| ||||| ||| ||| | |
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| T |
37159150 |
tggtaagtcgtaactccatccataaagtttttgttgccggtgattattgacttcttaccaccatcaccaacaaacacaatatgtgtcatatttgtta-aa |
37159052 |
T |
|
| Q |
127 |
acttcaacatactc |
140 |
Q |
| |
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|||||||||||||| |
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| T |
37159051 |
acttcaacatactc |
37159038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 37155215 - 37155327
Alignment:
| Q |
28 |
tggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaa |
127 |
Q |
| |
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||||| ||| ||| |||||| ||| | |||||||||||||| ||| | | ||| || ||||||||||| | |||||||| ||| ||||| || || || |
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| T |
37155215 |
tggtaggtggtaactccatccatatagtttttgttgccagtgattatcgacttcttaccaccatcaccaacaaacacaatatgtgtcatattttttaaaa |
37155314 |
T |
|
| Q |
128 |
cttcaacatactc |
140 |
Q |
| |
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||||||||||||| |
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| T |
37155315 |
cttcaacatactc |
37155327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 265
Target Start/End: Complemental strand, 46315244 - 46315021
Alignment:
| Q |
42 |
tccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaacttcaacatactca |
141 |
Q |
| |
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|||||| || || ||||| ||||| ||||| | |||||| | ||||||||||| | || ||||| |||||||| | |||||||||||||||||||| |
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| T |
46315244 |
tccatcaatgaagtttttattgcccgtaatgcgtgtctttctaccaccatcaccgatgaaaacaacgtgagtcatggttttagtaacttcaacatactct |
46315145 |
T |
|
| Q |
142 |
tgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttgaactttccactaccat |
241 |
Q |
| |
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| |||||||||||||||||| | ||||||||| || || ||| ||||| ||||| || || | ||| ||| ||||| | |||| |||||||| |||| |
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| T |
46315144 |
ttataaacaccctccttgatgtaaataacaaatggcttcaagtttttcttgggaacatgcttaagagcctcagtgattgtggtgaaatttccacttccat |
46315045 |
T |
|
| Q |
242 |
ctttagccacaaccacattagcct |
265 |
Q |
| |
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| ||||| ||||| |||| ||||| |
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| T |
46315044 |
ccttagcaacaacaacatgagcct |
46315021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 95453 - 95583
Alignment:
| Q |
28 |
tggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaa |
127 |
Q |
| |
|
||||| ||| ||| |||||| ||| | |||||||||||||| ||| ||| ||| || ||||||||||| | |||||||| ||| ||||| || || || |
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| T |
95453 |
tggtaggtggtaactccatccatatagtttttgttgccagtgattattgacttcttaccaccatcaccaacaaacacaatatgtgtcatattttttaaaa |
95552 |
T |
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| Q |
128 |
cttcaacatactcatgataaacaccctcctt |
158 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
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| T |
95553 |
cttcaacatactctcggtaaacaccttcctt |
95583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 92146 - 92258
Alignment:
| Q |
28 |
tggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaa |
127 |
Q |
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||||| ||| ||| |||||| ||| | |||||||||||||| ||| ||| ||| || ||||||||||| | |||||||| ||| ||||| || || || |
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| T |
92146 |
tggtaggtggtaactccatccatatagtttttgttgccagtgattattgacttcttaccaccatcaccaacaaacacaatatgtgtcatattttttaaaa |
92245 |
T |
|
| Q |
128 |
cttcaacatactc |
140 |
Q |
| |
|
||||||||||||| |
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|
| T |
92246 |
cttcaacatactc |
92258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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