View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_44 (Length: 245)
Name: NF1457_1D_low_44
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 46356578 - 46356806
Alignment:
| Q |
9 |
tggtgttgactgatgagaggcatatgtgaaagcaatcttttctcgaactcagcattgttgatgaagtcaacatacagttcaagctatgcaattaacatta |
108 |
Q |
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| T |
46356578 |
tggtgatgactgatgagaggcat--gtgaaagcaatcttttctcgaactcagcattgttgatgaagtcaacatacagttcaagctatgcaattaacatta |
46356675 |
T |
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| Q |
109 |
acgaatttccaaccgttttttattttcatagcacacaacagttctaaaatgagttgaaaatttatattaaattgaaataaaacagaaagggaaaaggaca |
208 |
Q |
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| T |
46356676 |
acgaatttccaactgttttttattttcataacacacaacagttctaaaatgagttgaaaatttatattaaattgaaataaaacagaaagggaaaaggaca |
46356775 |
T |
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| Q |
209 |
ttgtacatctaggatgaacctgggaaatttg |
239 |
Q |
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| T |
46356776 |
ttgtacatctaggatgaacctgggaaatttg |
46356806 |
T |
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Back To:
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 7177128 - 7177186
Alignment:
| Q |
47 |
tttctcgaactcagcattgttgatgaagtcaacatacagttcaagctatgcaattaaca |
105 |
Q |
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| T |
7177128 |
tttctagaacacagcattattgatgaaatcaacatagagttccagctatgcaatcaaca |
7177186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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