View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_45 (Length: 244)
Name: NF1457_1D_low_45
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_45 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 31110464 - 31110678
Alignment:
| Q |
21 |
cttcggtcgtaacttccgcatgagtttagacttgaaacttcggttttctcttcaggcatgtagtaaaca---acaaatcccacatcgagtatgtgttaaa |
117 |
Q |
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| T |
31110464 |
cttcggtcgtaacttccgcatgagtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaa |
31110563 |
T |
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| Q |
118 |
acatgtatgaatgtttacctataaaataagggtgtatatcagatattaatacatataacaactgggacccaaattcaatttgttgttgtctcccaaaatt |
217 |
Q |
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| T |
31110564 |
acatgtatgaatgtttacctataaaataagggtgtatatcagatattaatacatataacaactaggacccaaattcaaattgttgttgtcccccaaaatt |
31110663 |
T |
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| Q |
218 |
tgactattttataac |
232 |
Q |
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| T |
31110664 |
tgactattttataac |
31110678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 31080594 - 31080714
Alignment:
| Q |
39 |
catgagtttagacttgaaacttcggttttctcttcaggcatgtagtaaac---aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttac |
135 |
Q |
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| T |
31080594 |
catgagtttagacttaaaactttggttttctcttcaaacatgtagtataccacaacaagtcccacatagagtatgtgttaaaacatgcacgaaggtttac |
31080693 |
T |
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| Q |
136 |
ctataaaataagggtgtatat |
156 |
Q |
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| T |
31080694 |
ctataaaataagagtgtatat |
31080714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 31056714 - 31056851
Alignment:
| Q |
33 |
cttccgcatgagtttagacttgaaacttcggtttt-ctcttcaggcatgtagtaaac---aacaaatcccacatcgagtatgtgttaaaacatgtatgaa |
128 |
Q |
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| T |
31056714 |
cttctgcatgagtttagactcgaaactttgatttttctctacaagcatgtagtataccacaacaagtcccacatcgagtatgtgttaaaacaggcaggaa |
31056813 |
T |
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| Q |
129 |
tgtttacctataaaataagggtgtatatcagatattaa |
166 |
Q |
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| T |
31056814 |
ggtttacatataaaataagattgtatatcaaatattaa |
31056851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 31035473 - 31035590
Alignment:
| Q |
44 |
gtttagacttgaaacttcggttttctcttcaggcatgtagtaaac---aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctata |
140 |
Q |
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| T |
31035473 |
gtttaaacttgaaacttaggttttctcttcaaacatgtagtataccacaacaagttccacatcgagtatgtgttaaaacagtcatgaaggttttcctata |
31035572 |
T |
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| Q |
141 |
aaataagggtgtatatca |
158 |
Q |
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||| ||| |||||||||| |
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| T |
31035573 |
aaagaagagtgtatatca |
31035590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 31045951 - 31046020
Alignment:
| Q |
89 |
aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca |
158 |
Q |
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| T |
31045951 |
aacaagtcccacatcgagtatgtgttaaaacaggcatgaagatttccctataaaataagagtgtatatca |
31046020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 31027119 - 31027179
Alignment:
| Q |
98 |
cacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca |
158 |
Q |
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| T |
31027119 |
cacatcgagtatgtgttaaaacaggcacagaggtttacctataaaataagagtgtatatca |
31027179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 5109 - 4985
Alignment:
| Q |
38 |
gcatgagtttagacttgaaacttcggttttctcttcaggcatgtagtaa----acaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgttt |
133 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||| ||| ||||| ||||||| |||||||| |||||| ||||||||| | | | |||| |
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| T |
5109 |
gcatgagtttagacttgtaactttggttttctcttaaggtatgcagtaataccacaacaagtcccacatagagtatacgttaaaacaggcactgaggttt |
5010 |
T |
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| Q |
134 |
acctataaaataagggtgtatatca |
158 |
Q |
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| T |
5009 |
atctataaaataagagtgtatatca |
4985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 170779 - 170710
Alignment:
| Q |
89 |
aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca |
158 |
Q |
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||||| ||||||||||||||| ||||||||||| | ||| |||||||||||||||||| |||| ||||| |
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| T |
170779 |
aacaagtcccacatcgagtatatgttaaaacatagaagaaggtttacctataaaataagagtgtgtatca |
170710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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