View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_46 (Length: 244)
Name: NF1457_1D_low_46
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 40942727 - 40942875
Alignment:
| Q |
31 |
tatatttgacctaaaatggcctcccctattaaaactatgtagccagtttctcttacacatgctaccaccgaacatgataaagacaatcgcaacaactacg |
130 |
Q |
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| T |
40942727 |
tatatttgatctaaaatggcatcctctattaaa-ctatgcagccagtttctcttacacatgctaccaccgaccatgataaagacaatcatgacaactatg |
40942825 |
T |
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| Q |
131 |
ttgtggcagcaactaatggcaactaagttgtgcagagacaacgacggagg |
180 |
Q |
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| T |
40942826 |
ttttggcagcaactaatggcaactaagttgtgtggagacaacgacggagg |
40942875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 19156664 - 19156734
Alignment:
| Q |
108 |
taaagacaatcgcaacaactacgttgtggcagcaactaatggcaactaagttgtgcagagacaacgacgga |
178 |
Q |
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| T |
19156664 |
taaagacaatcacaacaactatgttgtggcagcaactaatggcaactaagttgtgaggagacaacgacgga |
19156734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 19156506 - 19156588
Alignment:
| Q |
16 |
actgtttgccagtgttatatttgacctaaaatggcctcccctattaaaactatgtagccagtttctcttacacatgctaccacc |
99 |
Q |
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| T |
19156506 |
actgtttgccagcattatatttgatctaaaatggcctcctctatt-aaactatgcagcaagtttctcttacacatggtaccacc |
19156588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 6726778 - 6726894
Alignment:
| Q |
104 |
atgataaagacaatcgcaacaactacgttgtggcagcaactaatggcaactaagttgtgcagagacaacgacggaggcgacaataaagactatactacaa |
203 |
Q |
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| T |
6726778 |
atgatgaaggcaatcacaacaactatgtcgtggtagcaactaatggcaactaagttgtgcggcggcaacgacaaaggtgacaatgaagac--aactaaaa |
6726875 |
T |
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| Q |
204 |
taacaaaaatgttgatggc |
222 |
Q |
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| T |
6726876 |
caacaaaaatgttgatggc |
6726894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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