View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_48 (Length: 241)
Name: NF1457_1D_low_48
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 3984325 - 3984131
Alignment:
| Q |
29 |
taaccaccagaagaacaaatttacaggaataccagaaacaacaacagacgacttaacaaatgagttatccataaccatcgcgaccaacacaaaacaaata |
128 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3984325 |
taaccaccagaacaacaaatttccaggaataccagaaacaacaacagacgacttaacaaatgagttatccataaccatcgcgaccaacacaaaacaaata |
3984226 |
T |
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| Q |
129 |
caactttaaccactcaacaaaccaagcaaagagagcccgaaacgatgagcaacaaagcagaaggtgtgtggcttttatagtaaacgaacaagaag |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3984225 |
caactttaaccactcaacaaacaaagcaaagagagcccaaaacgatgagcaacaaagcagaaggtgtgtggcttttatagtaaacgaacaagaag |
3984131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 32970900 - 32971082
Alignment:
| Q |
29 |
taaccaccagaagaacaaatttacaggaataccagaaacaacaacagacgacttaacaaatgagttatccataaccatcgcgaccaacacaaaacaaata |
128 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
32970900 |
taaccaccagaacaacaaatttccaggaataccagaaacaacaacagacggctta------------tccataaccatcgcgaccaacacaaaacaaata |
32970987 |
T |
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| Q |
129 |
caactttaaccactcaacaaaccaagcaaagagagcccgaaacgatgagcaacaaagcagaaggtgtgtggcttttatagtaaacgaacaagaag |
223 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32970988 |
caactttaaccactcaacaaaccaagcaaagagagtccaaaacgatgagcaacaaagcagaaggtgtgtggcttttatagtaaacgaacaagaag |
32971082 |
T |
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