View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457_1D_low_49 (Length: 233)

Name: NF1457_1D_low_49
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457_1D_low_49
NF1457_1D_low_49
[»] chr4 (11 HSPs)
chr4 (16-233)||(31150833-31151050)
chr4 (65-219)||(31162122-31162276)
chr4 (54-230)||(31020332-31020508)
chr4 (56-210)||(31489046-31489200)
chr4 (54-230)||(31030213-31030389)
chr4 (54-230)||(31159734-31159910)
chr4 (59-230)||(31496404-31496575)
chr4 (48-107)||(31529116-31529175)
chr4 (59-208)||(31501574-31501723)
chr4 (59-153)||(31482303-31482397)
chr4 (153-230)||(31476558-31476635)
[»] chr6 (8 HSPs)
chr6 (144-230)||(13608607-13608693)
chr6 (141-210)||(33642147-33642216)
chr6 (128-196)||(33306981-33307049)
chr6 (57-164)||(33060082-33060189)
chr6 (59-210)||(33390554-33390705)
chr6 (53-211)||(31566566-31566724)
chr6 (57-106)||(33361083-33361132)
chr6 (78-210)||(33288056-33288188)
[»] chr8 (1 HSPs)
chr8 (177-230)||(6472955-6473008)
[»] chr2 (1 HSPs)
chr2 (57-164)||(17438135-17438242)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 31151050 - 31150833
Alignment:
Q  16 tgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151050 tgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaa 31150951  T
Q  116 aggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150950 aggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaat 31150851  T
Q  216 ctctctggatgggatgta 233  Q
    ||||||||||||||||||    
T  31150850 ctctctggatgggatgta 31150833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 31162276 - 31162122
Alignment:
Q  65 tgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaa 164  Q
    |||||||||||| ||||||||||||||||| |  ||| || ||||||||||||||  ||||| |||||||||    ||||||||| ||||||||||||||    
T  31162276 tgttctgcctgttttctatgatgttgatccttatgagatgagatatcaaaaaggaaattatgttgaagcctttttcaaacatgaacaaagattccaacaa 31162177  T
Q  165 aactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctct 219  Q
     ||| ||| || |||||||||||||||||||| |  |||||||| ||||||||||    
T  31162176 gactctgagatggtgcaaagatggagggaagctcaaacacaagtcgccaatctct 31162122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 31020508 - 31020332
Alignment:
Q  54 tctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 153  Q
    ||||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||||||||  ||| | |||||||||  | ||||||||| |||    
T  31020508 tctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaa 31020409  T
Q  154 gattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
     |||||||||  ||| | |  | || ||||| ||||||||||| |||||||||||||  ||| ||||||| ||||||    
T  31020408 cattccaacatgactctcatgtggtacaaagttggagggaagctctgacacaagtggggaatatctctggctgggat 31020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 31489046 - 31489200
Alignment:
Q  56 tggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaaga 155  Q
    ||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||||||||  ||| | |||||||||  | ||||||||| ||| |    
T  31489046 tggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaaca 31489145  T
Q  156 ttccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtgg 210  Q
    ||||||||  ||| | |  | || ||||||||||||||||| |||||||||||||    
T  31489146 ttccaacatgactctcatgtggtacaaagatggagggaagctctgacacaagtgg 31489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 31030389 - 31030213
Alignment:
Q  54 tctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 153  Q
    ||||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||||||||  ||| | |||||||||  | ||||||||| |||    
T  31030389 tctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaa 31030290  T
Q  154 gattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
     |||||||||  | | | |  | || ||||| ||||||||||| |||||||||||||  ||| ||||||| ||||||    
T  31030289 cattccaacatgaatctcatgtggtacaaagttggagggaagctctgacacaagtggggaatatctctggctgggat 31030213  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 31159910 - 31159734
Alignment:
Q  54 tctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 153  Q
    |||||||  |||||||| ||| | ||||||||||||||||| || |||||| || ||||||| ||| ||||||  |||||| | || ||||| |||||||    
T  31159910 tctggaactcgtgttctccctattttctatgatgttgatccttctgaggtgagacatcaaaatggaagttatggagaagcccttgccaaacacgaagaaa 31159811  T
Q  154 gattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
    ||||||||||  | |  || || || ||||||||||||| |   || |||||||| |||||||||||||| ||||||    
T  31159810 gattccaacatgaatcagagatggtacaaagatggagggcaagtctaacacaagtcgccaatctctctggttgggat 31159734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 31496404 - 31496575
Alignment:
Q  59 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 158  Q
    ||||| |||||||||||| |||||||||||||| || ||   ||||||| | ||||  |||  ||||| |||||| || |  ||||||||| ||||||||    
T  31496404 aaaacatgttctgcctgttttctatgatgttgacccttctatggtgcgaaagcaaagtggaatttatggtgaagcatttgtcaaacatgaacaaagattc 31496503  T
Q  159 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
    |||||| ||| | | || |||||||||||||||||||| || | |||||| ||  |||||||||| ||||||    
T  31496504 caacaagactctcagatggtgcaaagatggagggaagctctaatacaagtcgctgatctctctggttgggat 31496575  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 31529175 - 31529116
Alignment:
Q  48 caactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcga 107  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||    
T  31529175 caactttctggaaaacgtgttctccctgttttctatgatgttgatccttccgaggtgcga 31529116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 31501574 - 31501723
Alignment:
Q  59 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 158  Q
    ||||| |||||||||||| |||||||||||||||||  | | ||||||| | ||||  ||   ||||  |||||| || |  ||||||||| ||| ||||    
T  31501574 aaaacatgttctgcctgttttctatgatgttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaagcatttgtcaaacatgaacaaatattc 31501673  T
Q  159 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagt 208  Q
    |||||| ||| | | || |||| ||||||||||||||| |||||||||||    
T  31501674 caacaagactctcagatggtgctaagatggagggaagctctgacacaagt 31501723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 31482303 - 31482397
Alignment:
Q  59 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 153  Q
    ||||||||||| | |||| |||||||||||  ||||||| ||||| ||| | ||||  ||  |||||||| ||||||| || |||||||||||||    
T  31482303 aaaacgtgttcggactgttttctatgatgtcaatccatctgaggtacgaaagcaaagtgggagttatgctaaagcctttgccaaacatgaagaaa 31482397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 31476558 - 31476635
Alignment:
Q  153 agattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
    |||||| ||||| ||| | |||| |||| | ||||||||| ||| ||||||||||| ||| |||||||||| ||||||    
T  31476558 agattcaaacaagactctcaaatggtgctacgatggagggcagctctgacacaagtcgccgatctctctggttgggat 31476635  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 13608607 - 13608693
Alignment:
Q  144 catgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
    ||||||||||||||| || ||||||| ||    |||||||||||||||| ||| || |||||||| |||||||||||||| ||||||    
T  13608607 catgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 13608693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 33642147 - 33642216
Alignment:
Q  141 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtgg 210  Q
    ||||||||| |||||||||||||| ||||| |||| |||  ||||||||||||||| || | ||||||||    
T  33642147 aaacatgaacaaagattccaacaagactttcaaatggtgtcaagatggagggaagctctaaaacaagtgg 33642216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 33307049 - 33306981
Alignment:
Q  128 tgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagc 196  Q
    ||||||||| |  ||||||||| |||||||||||||| ||||||| || |||  |||||||||||||||    
T  33307049 tgaagcctttgtcaaacatgaacaaagattccaacaagactttgagatggtgtcaagatggagggaagc 33306981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 33060189 - 33060082
Alignment:
Q  57 ggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagat 156  Q
    ||||||| |||||| ||||| ||||||||||||||||| || ||||||||  | ||||  |||  ||||  |||||| || |  ||||||||| ||||||    
T  33060189 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcggaagcaaagtggaatttatagtgaagcttttgtcaaacatgaacaaagat 33060090  T
Q  157 tccaacaa 164  Q
    ||||||||    
T  33060089 tccaacaa 33060082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 33390705 - 33390554
Alignment:
Q  59 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 158  Q
    ||||| |||||| ||||| || |||||||||||||| || ||||| ||| | ||||  |||  ||||| | |||| || |  ||||||||| ||||||||    
T  33390705 aaaacttgttcttcctgttttttatgatgttgatccttctgaggttcgaaagcaaagtggaatttatgataaagcttttgtcaaacatgaacaaagattc 33390606  T
Q  159 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtgg 210  Q
    |||||||||| | | || |||  ||||||||| ||||| || | ||||||||    
T  33390605 caacaaaactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 33390554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 31566566 - 31566724
Alignment:
Q  53 atctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaa 152  Q
    ||||| ||||| |||||| | ||| ||||||||||||||||| || ||||| ||| | ||||  ||   |||| ||||||| || || ||||||||| ||    
T  31566566 atctgaaaaacatgttcttcttgttttctatgatgttgatccttctgaggttcgaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaa 31566665  T
Q  153 agattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggc 211  Q
    ||||||| |||| ||| | | || |||  ||||||||| ||||| || | |||||||||    
T  31566666 agattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggc 31566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 33361132 - 33361083
Alignment:
Q  57 ggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcg 106  Q
    ||||||| |||||| ||||| ||||||||||||||||| || ||||||||    
T  33361132 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcg 33361083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 33288188 - 33288056
Alignment:
Q  78 ttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattg 177  Q
    ||||||||||||||||| || ||||||||| | ||||  ||   ||||| |||||||||  | | ||||||| ||| |||||||||| ||| | | || |    
T  33288188 ttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcagatgg 33288089  T
Q  178 tgcaaagatggagggaagcactgacacaagtgg 210  Q
    ||  ||||||||||||||| || | ||||||||    
T  33288088 tgtcaagatggagggaagccctaaaacaagtgg 33288056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 6473008 - 6472955
Alignment:
Q  177 gtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 230  Q
    |||||||||||||||| ||| || |||||||| |||||||||||||| ||||||    
T  6473008 gtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 6472955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 17438135 - 17438242
Alignment:
Q  57 ggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagat 156  Q
    ||||||| |||||| ||||| ||||||||||||||||| || ||||||||| | ||||  ||   ||||  |||||| || |  ||||||||| ||||||    
T  17438135 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagat 17438234  T
Q  157 tccaacaa 164  Q
    ||||||||    
T  17438235 tccaacaa 17438242  T

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