View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_50 (Length: 231)
Name: NF1457_1D_low_50
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16468454 - 16468241
Alignment:
| Q |
1 |
gcacttagtaaacatataatactggatcaacaacaatggtgacggtcacataaaactccaaggttcaacaatagtgactaacataattcaagtattgaac |
100 |
Q |
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| T |
16468454 |
gcacttagtaaacatataatactggatcaacaacaatggtaacggtcacataaaactccaaggttcaacaatagtaactaacataattcaagtattgaac |
16468355 |
T |
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| Q |
101 |
tttttaattcaagaggccttttattttcatcagtagatggatctctttaaatttaaaataggttttgttgtttatgaaaatactttgagagatactaata |
200 |
Q |
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| T |
16468354 |
tttttaattcaagaggccttttattttcatcagtagatggatctctttaaatttaaaataggttttgttgtttatgaaaatactttgagagatactaata |
16468255 |
T |
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| Q |
201 |
aaatatagtttgat |
214 |
Q |
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| T |
16468254 |
aaatatagtttgat |
16468241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 16474342 - 16474230
Alignment:
| Q |
80 |
aacataattcaagtattgaactttttaattcaagaggccttttattttcatcagtagatggatctctttaaatttaaaataggttttgttgtttatgaaa |
179 |
Q |
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| T |
16474342 |
aacaaaatttaaatattcaacttttgaattcaagat--cttttctttttagcactatatcgatatctttaaattgaaaataggttttcttgtttaagaaa |
16474245 |
T |
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| Q |
180 |
atactttgagagata |
194 |
Q |
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| T |
16474244 |
atactttgagagata |
16474230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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