View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_53 (Length: 228)
Name: NF1457_1D_low_53
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_53 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 35072101 - 35071886
Alignment:
| Q |
13 |
caaagagggagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgt |
112 |
Q |
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| T |
35072101 |
caaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgt |
35072002 |
T |
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| Q |
113 |
gttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactg |
212 |
Q |
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| T |
35072001 |
gttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactg |
35071902 |
T |
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| Q |
213 |
ttactgtccctaagga |
228 |
Q |
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| T |
35071901 |
ttactgtccctaagga |
35071886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 35072937 - 35072805
Alignment:
| Q |
17 |
gagggagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttg |
116 |
Q |
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| T |
35072937 |
gaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtgg |
35072838 |
T |
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| Q |
117 |
agcgtagtagtggtaaattcatgaggagtttta |
149 |
Q |
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| T |
35072837 |
agcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
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