View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_61 (Length: 219)
Name: NF1457_1D_low_61
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 50756564 - 50756352
Alignment:
| Q |
1 |
acctatattaatacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50756564 |
acctatattaatacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaaga |
50756465 |
T |
|
| Q |
101 |
atggtcaagatctgagggtcagaatgctccccaaagccaacattgttggaatgtgacttgtccttgttaagtgtaggtgggtagtgattgagcctaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50756464 |
atggtcaagatctgagggtcagaatgctccccaaagccaacattgttggaatgtgacttgtccttgttaagtgtaggtgggtagtgattgagcctaagaa |
50756365 |
T |
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| Q |
201 |
ctgagtcactatc |
213 |
Q |
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||||||||||||| |
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| T |
50756364 |
ctgagtcactatc |
50756352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4320315 - 4320417
Alignment:
| Q |
1 |
acctatattaatacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaaga |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4320315 |
acctatattaacacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaaga |
4320414 |
T |
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| Q |
101 |
atg |
103 |
Q |
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||| |
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| T |
4320415 |
atg |
4320417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 12610391 - 12610491
Alignment:
| Q |
52 |
accatgttgaagagaaatttgaagaccagaaacgtcattagatctaagaatggtcaagatctgagggtcagaatgctccccaaagccaacattgttggaa |
151 |
Q |
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|||||||||||| |||||||| ||||||| ||| || || |||||||| || || | ||||||||||||||||| || ||||||||||| |||| |||| |
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| T |
12610391 |
accatgttgaagtgaaatttggagaccagcaacatcgttggatctaaggatagtaagaatctgagggtcagaatgttctccaaagccaacgttgtaggaa |
12610490 |
T |
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| Q |
152 |
t |
152 |
Q |
| |
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| |
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|
| T |
12610491 |
t |
12610491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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