View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457_1D_low_69 (Length: 206)
Name: NF1457_1D_low_69
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_69 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 37170599 - 37170788
Alignment:
| Q |
7 |
ttcacatgctgggaatcatttacagagatctaaagcctgagaatgtgttagttcgatcagacggtcacattatgctttcagatttcgatctttcactttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37170599 |
ttcacatgctgggaatcatttacagagatctaaagcctgagaatgtgttagttcgatcagacggtcacattatgctttcagatttcgatctttcactttg |
37170698 |
T |
|
| Q |
107 |
ctcaaatgcaatcccagctgttgaatcatcagataatttacaagattcttccactttttcatcaacattaccctacactcgttcccgttc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37170699 |
ctcaaatgcaatcccagctgttgaatcatcagataatttacaagattcttccactttttcatcaacattaccctacactcgttcccgttc |
37170788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 6073039 - 6072911
Alignment:
| Q |
9 |
cacatgctgggaatcatttacagagatctaaagcctgagaatgtgttagttcgatcagacggtcacattatgctttcagatttcgatctttcactttgct |
108 |
Q |
| |
|
|||||| | ||||| || ||||||||| ||||||| || || |||||||| |||| ||||||||||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
6073039 |
cacatgttaggaataatctacagagatttaaagccggaaaacgtgttagtcagatcggacggtcacatcatgctctcagattttgatctctcactaattt |
6072940 |
T |
|
| Q |
109 |
caaatgcaatcccagctgttgaatcatca |
137 |
Q |
| |
|
| ||||||||||||| |||||||||||| |
|
|
| T |
6072939 |
cccatgcaatcccagcggttgaatcatca |
6072911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 46834641 - 46834735
Alignment:
| Q |
9 |
cacatgctgggaatcatttacagagatctaaagcctgagaatgtgttagttcgatcagacggtcacattatgctttcagatttcgatctttcact |
103 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||||||| |||||||| ||||| || ||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
46834641 |
cacatgatgggaatagtatacagagatttaaagccagagaatgttttagtaagagaagatggacacataatgctttcagattttgatctttcact |
46834735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 12234233 - 12234145
Alignment:
| Q |
9 |
cacatgctgggaatcatttacagagatctaaagcctgagaatgtgttagttcgatcagacggtcacattatgctttcagatttcgatct |
97 |
Q |
| |
|
|||||||| |||||||| |||||||| || ||||| ||||| ||||| || || ||| |||||||| ||||| || ||||||||||| |
|
|
| T |
12234233 |
cacatgcttggaatcatctacagagaccttaagcccgagaacgtgttggtgagagaagatggtcacataatgctatcggatttcgatct |
12234145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University