View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_8 (Length: 374)
Name: NF1457_1D_low_8
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 23015934 - 23016296
Alignment:
| Q |
12 |
tggacatcatgctcgtatcttagtcgatatatatttttctcaccatatgttcgatgaaattatggtggaacgagatagctattctttcaaagtggaagtt |
111 |
Q |
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| T |
23015934 |
tggacattatgctcgtatcttagtcgatatatatttttctcaccatatgttcgatgaaattatggtggaacgagataggtattctttcaaagtggaagtt |
23016033 |
T |
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| Q |
112 |
tcttatgaatgacttccagacttttgttcacattgccagattattagtcatgacgtcactacgtgccatcggttgattcatcataaggttgcggaaaaaa |
211 |
Q |
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| T |
23016034 |
tgttatgaatgacttccagacttttgttcacattgccagattattagtcatgacgtcactacgtgccgtcggttgattcatcataaggttgcggaaaaaa |
23016133 |
T |
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| Q |
212 |
ttgattgtggtaaataactgtctctttttacaaagaaagctattcaaacatatgttgaaaaggagaatgcagacgacatcggattctcttgggtttttga |
311 |
Q |
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| T |
23016134 |
ttgattgtggtaaataactgtctctttttacaaagaaagctattcaaacatatgttgaaaaggagaatgtagacgacatcggattctcttgggtttttga |
23016233 |
T |
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| Q |
312 |
ggcgccaattccttccaatgttgacaactgtgttaataaagatgctactgcttctaaaaatgc |
374 |
Q |
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| T |
23016234 |
ggcgccgattccttcccatgttgacaactgtgttaataaagatgctactgcttgtaaaaatgc |
23016296 |
T |
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