View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_9 (Length: 367)
Name: NF1457_1D_low_9
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 363
Target Start/End: Complemental strand, 31137405 - 31137047
Alignment:
| Q |
5 |
cagaagagtccctcaagctgttacagttttcaatcatgatcattttagcttaccgtttatgccggtttgcgatctttggagagacctaagaaaaatatgc |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137405 |
cagaacagtccctcaagctgttacagttttcaatcatgatcattttagcttaccctttatgccggtttgcgatctttggagagacctaagaaaaatatgc |
31137306 |
T |
|
| Q |
105 |
aaaaaccatttgttttctagcaaaactcttgatgctagctatgcacttaggtgtaagaagcttcaagagcttttatgtgatatagaaaaaagcagcgtaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||| | | ||| |
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| T |
31137305 |
aaaaaccatttgttttctagcaaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttatgtgatattgatagaagtaacttaa |
31137206 |
T |
|
| Q |
205 |
ttggtgaagcggttgatgttggaaaagctgtttttaagacttcattgaattttttgtcaaacacannnnnnnctatggattttgttaactctgcaggaga |
304 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
31137205 |
ttggggaagctgttgatgttggaaaagctgtttttaaaacttcattgaattttttgtcaaacgcatttttttctatggattttgttaactctgcaggaga |
31137106 |
T |
|
| Q |
305 |
aactgatgaatacaaaggtataattgaaaatcttgtgagagcaataggaactccaaact |
363 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31137105 |
aactgatgaatataaaggtataattgaaaatcttgtgagagcaataggaacaccaaact |
31137047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 31151634 - 31151992
Alignment:
| Q |
5 |
cagaagagtccctcaagctgttacagttttcaatcatgatcattttagcttaccgtttatgccggtttgcgatctttggagagacctaagaaaaatatgc |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
31151634 |
cagaacagtccctcaagctgttacagttttcaatcatgatcattttagcttaccgtttatgccggtttgcgatctttggagagacttacgaaaaatatgc |
31151733 |
T |
|
| Q |
105 |
aaaaaccatttgttttctagcaaaactcttgatgctagctatgcacttaggtgtaagaagcttcaagagcttttatgtgatatagaaaaaagcagcgtaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||| | | ||| |
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| T |
31151734 |
aaaaaccatttgttttctagcaaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttatgtgatattgatagaagtaacttaa |
31151833 |
T |
|
| Q |
205 |
ttggtgaagcggttgatgttggaaaagctgtttttaagacttcattgaattttttgtcaaacacannnnnnnctatggattttgttaactctgcaggaga |
304 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
31151834 |
ttggggaagctgttgatgttggaaaagctgtttttaaaacttcattgaattttttgtcaaacgcatttttttctatggattttgttaactctgcaggaga |
31151933 |
T |
|
| Q |
305 |
aactgatgaatacaaaggtataattgaaaatcttgtgagagcaataggaactccaaact |
363 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31151934 |
aactgatgaatataaaggtataattgaaaatcttgtgagagcaataggaacaccaaact |
31151992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 46 - 363
Target Start/End: Original strand, 31129828 - 31130145
Alignment:
| Q |
46 |
attttagcttaccgtttatgccggtttgcgatctttggagagacctaagaaaaatatgcaaaaaccatttgttttctagcaaaactcttgatgctagcta |
145 |
Q |
| |
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||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
31129828 |
attttagcttaccctttatgccagtttgtgatctttggagagacctaagaaaaatatgcaaaaaccaattgttttctagccaaactcttgatgctagcca |
31129927 |
T |
|
| Q |
146 |
tgcacttaggtgtaagaagcttcaagagcttttatgtgatatagaaaaaagcagcgtaattggtgaagcggttgatgttggaaaagctgtttttaagact |
245 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||| ||||| |||||||||| |
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| T |
31129928 |
tgcacttaggtgtaagaagcttcaagagcttttaagtgatatagaaaaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagact |
31130027 |
T |
|
| Q |
246 |
tcattgaattttttgtcaaacacannnnnnnctatggattttgttaactctgcaggagaaactgatgaatacaaaggtataattgaaaatcttgtgagag |
345 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||| | |
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| T |
31130028 |
tcattgaattttttgtcaaacacttttttctctatggattttgttaactctgcaggtgaaactgatgaatataaaggtatagttgaaaaccttgtgaggg |
31130127 |
T |
|
| Q |
346 |
caataggaactccaaact |
363 |
Q |
| |
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|||||||||||||||||| |
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| T |
31130128 |
caataggaactccaaact |
31130145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 45 - 361
Target Start/End: Complemental strand, 24485237 - 24484921
Alignment:
| Q |
45 |
cattttagcttaccgtttatgccggtttgcgatctttggagagacctaagaaaaatatgcaaaaaccatttgttttctagcaaaactcttgatgctagct |
144 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
24485237 |
cattttagcttaccctttatgccagtttcagatctttggagagacctaaaaaaattatacaaaaaccatttgttttctaacaaaacacttgatgctagta |
24485138 |
T |
|
| Q |
145 |
atgcacttaggtgtaagaagcttcaagagcttttatgtgatatagaaaaaagcagcgtaattggtgaagcggttgatgttggaaaagctgtttttaagac |
244 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||| || | ||||||| ||| | || |||| || |||||||||| |||| ||||||||| |
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| T |
24485137 |
atgaacttaggtgtaagaagcttcaagagcttttaagtgatattgatagaagcagcttaacttgtaaagcagtagatgttggaagagctacttttaagac |
24485038 |
T |
|
| Q |
245 |
ttcattgaattttttgtcaaacacannnnnnnctatggattttgttaactctgcaggagaaactgatgaatacaaaggtataattgaaaatcttgtgaga |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| || |||| ||| ||||||||||||||||| |
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| T |
24485037 |
ttcattgaattttttgtcaaacacttttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgaga |
24484938 |
T |
|
| Q |
345 |
gcaataggaactccaaa |
361 |
Q |
| |
|
||||||||||| ||||| |
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| T |
24484937 |
gcaataggaacaccaaa |
24484921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 38 - 363
Target Start/End: Complemental strand, 24468745 - 24468420
Alignment:
| Q |
38 |
tcatgatcattttagcttaccgtttatgccggtttgcgatctttggagagacctaagaaaaatatgcaaaaaccatttgttttctagcaaaactcttgat |
137 |
Q |
| |
|
|||||| |||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
24468745 |
tcatgaacattttagcttaccatttatgccaatgtcaaatctttggagagacctaagaaaaatatgcaaaaacaatttgttttctaacaaaactcttgat |
24468646 |
T |
|
| Q |
138 |
gctagctatgcacttaggtgtaagaagcttcaagagcttttatgtgatatagaaaaaagcagcgtaattggtgaagcggttgatgttggaaaagctgttt |
237 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |||||||||||||||||||| || | ||| ||| | |||||||||| || ||||||| ||||||| || |
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|
| T |
24468645 |
gctagcaatgaacttaggtgtaagaagctgcaagagcttttatgtgatattgatagaagtagcttggttggtgaagcagtggatgttgagaaagctgctt |
24468546 |
T |
|
| Q |
238 |
ttaagacttcattgaattttttgtcaaacacannnnnnnctatggattttgttaactctgcaggagaaactgatgaatacaaaggtataattgaaaatct |
337 |
Q |
| |
|
||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||| || |||| |||| |||||| ||| |
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|
| T |
24468545 |
ttaagactttgttgaatgttttgtcaaacacttttttctccatggattttgttaactctgcaggtgaaactgatgagtataaagatatagttgaaagtct |
24468446 |
T |
|
| Q |
338 |
tgtgagagcaataggaactccaaact |
363 |
Q |
| |
|
| ||| |||||||||||| ||||||| |
|
|
| T |
24468445 |
tatgacagcaataggaacaccaaact |
24468420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 41128230 - 41128301
Alignment:
| Q |
192 |
aaaagcagcgtaattggtgaagcggttgatgttggaaaagctgtttttaagactt-cattgaattttttgtca |
263 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||| ||||| ||| ||| ||| |||| |||||||||||| |
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|
| T |
41128230 |
aaaagcagcataactggtgaagctgttgatgttggaagagctgctttcaaggcttgcatt-aattttttgtca |
41128301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 41144451 - 41144380
Alignment:
| Q |
192 |
aaaagcagcgtaattggtgaagcggttgatgttggaaaagctgtttttaagactt-cattgaattttttgtca |
263 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||| ||||| ||| ||| ||| |||| |||||||||||| |
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| T |
41144451 |
aaaagcagcataactggtgaagctgttgatgttggaagagctgctttcaaggcttgcatt-aattttttgtca |
41144380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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