View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457_2D_high_1 (Length: 649)

Name: NF1457_2D_high_1
Description: NF1457_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457_2D_high_1
NF1457_2D_high_1
[»] chr2 (2 HSPs)
chr2 (315-649)||(37215954-37216287)
chr2 (255-318)||(19713444-19713506)
[»] chr5 (2 HSPs)
chr5 (15-317)||(42862448-42862733)
chr5 (241-318)||(25043886-25043964)
[»] chr6 (1 HSPs)
chr6 (30-318)||(19814464-19814737)
[»] scaffold0657 (1 HSPs)
scaffold0657 (30-318)||(8299-8572)
[»] chr3 (2 HSPs)
chr3 (30-130)||(1203385-1203489)
chr3 (143-197)||(1203486-1203538)
[»] chr4 (1 HSPs)
chr4 (221-318)||(41951079-41951175)
[»] chr7 (1 HSPs)
chr7 (280-318)||(7646713-7646751)
[»] chr1 (1 HSPs)
chr1 (272-318)||(20600464-20600514)
[»] scaffold0150 (1 HSPs)
scaffold0150 (241-316)||(34805-34881)
[»] scaffold0028 (1 HSPs)
scaffold0028 (241-316)||(147443-147519)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 315 - 649
Target Start/End: Original strand, 37215954 - 37216287
Alignment:
Q  315 accacccttcacactaacaaccaccactactcacatgtcctcacttccctctctacaacccctttgacaacattaacaccttccttaccacacgcggact 414  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37215954 accacccttcacactaacaaccaccactactcacatgccctcacttccctctctacaacccctttgacaaaattaacaccttccttaccacacgcggact 37216053  T
Q  415 ccctttataacatgtaatcccacctctttctccacccttcatctcagataaaacaataacaataataaccttgcaacctttgtattttaccccaatagac 514  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37216054 ccctttataacatgtaatcccccctctttctccacccttcatcttagataaaacaataacaataataaccttgcaacctttgtattttaccccaatagac 37216153  T
Q  515 ttatcaatccttcatgcattcatccattgtgacttcatgtttatcacgtaaaaccatcaaaattttcatatcacaattaaccgataaataagaactacta 614  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37216154 ttatcaatccttcatgca-tcatctattgtgacttcatgtttatcacgtaaaaccatcaaaattttcatatcacaattaaccgataaataagaactacta 37216252  T
Q  615 gaagataattgaacccctgttaccttcagccttag 649  Q
    |||||||||||||||||||||||||||||||||||    
T  37216253 gaagataattgaacccctgttaccttcagccttag 37216287  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 19713444 - 19713506
Alignment:
Q  255 catgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 318  Q
    |||||||||| |||   ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19713444 catgcgtcatgcaagatcgtcccaccccaaaa-tatttttccgaggattattgctctgatacca 19713506  T

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Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 42862733 - 42862448
Alignment:
Q  15 acatcataaacaaaataaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacacca----actcaattgctgcaga 110  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| | ||||||| |||| ||    ||||||||||||||||    
T  42862733 acatcataaacaaaataatctatatattagcaacctatatatccacaccatgaaagaattaaagagactatatgacaacaaactactcaattgctgcaga 42862634  T
Q  111 tttacgcttaacatcttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnn 210  Q
    || |||||||||||||                |||||||| |||||||||||||||||||||||||| |||||||||||||||||||    |||||||      
T  42862633 ttcacgcttaacatct----------------tcaagaagccatatatatacaagtacatttagatcatcaatttaataacagaaaaaatgtcaagacaa 42862550  T
Q  211 nnnnnnncaaatggatcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctc 310  Q
            ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||| ||||||| |||    
T  42862549 aaaa----aaaaggatcaaatcattcccaaacatcaatcaaaagcatgcgtcatacaaacacgtccca-ccctaaaatattagtccgaagattattactc 42862455  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 25043886 - 25043964
Alignment:
Q  241 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt--gtccgaggattattgctctgatacca 318  Q
    ||||||||||||| || |||||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  25043886 acatcaatcaaaa-cacgcgtcatacaagatcgtcccaccccaaaaatatttttgtccgaggattattgctctgatacca 25043964  T

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Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 19814464 - 19814737
Alignment:
Q  30 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 125  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  19814464 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 19814563  T
Q  126 ttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnnnnnnca-aatgg 224  Q
    |||||                |||||||||||||  |||||||||||||||| |||||||||||||||||||    |||||||          | ||||     
T  19814564 ttcaa----------------gaagtcatatata--caagtacatttagatcatcaatttaataacagaaaaatg-tcaagacaaagaaaataacaatga 19814644  T
Q  225 atcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 318  Q
    |||||||||||| || |||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19814645 atcaaatcattcacagacatcaatcaaa-gcatgcgtcataaaaacacgtcccaccccaaaaatattagtccgaggattattgctctgatacca 19814737  T

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Target: scaffold0657 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 8299 - 8572
Alignment:
Q  30 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 125  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  8299 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 8398  T
Q  126 ttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnnnnnnca-aatgg 224  Q
    |||||                ||| |||||||||  |||||||||||||||| |||||||||||||||||||    |||||||          | ||||     
T  8399 ttcaa----------------gaaatcatatata--caagtacatttagatcatcaatttaataacagaaaaatg-tcaagacaaagaaaataacaatga 8479  T
Q  225 atcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 318  Q
    |||||||||||| || |||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8480 atcaaatcattcacagacatcaatcaaa-gcatgcgtcataaaaacacgtcccaccccaaaaatattagtccgaggattattgctctgatacca 8572  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 1203385 - 1203489
Alignment:
Q  30 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 125  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  1203385 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 1203484  T
Q  126 ttcaa 130  Q
    |||||    
T  1203485 ttcaa 1203489  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 1203486 - 1203538
Alignment:
Q  143 tcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaa 197  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||    
T  1203486 tcaagaagtcatat--atacaagtaaatttagatcatcaatttaataacagaaaa 1203538  T

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Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 41951079 - 41951175
Alignment:
Q  221 atggatcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 318  Q
    |||||||||| ||||| || |  |||||||||||||||| ||||| |||  |||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  41951079 atggatcaaaacattcacacaactcaatcaaaagcatgcatcatataaaagcgtcccaccc-aaaaatatttgtccgaggactattgctcttatacca 41951175  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 7646751 - 7646713
Alignment:
Q  280 cccaaaaatatttgtccgaggattattgctctgatacca 318  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7646751 cccaaaaacatttgtccgaggattattgctctgatacca 7646713  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 20600464 - 20600514
Alignment:
Q  272 cgtcccaccccaaaaatattt----gtccgaggattattgctctgatacca 318  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||||||    
T  20600464 cgtcccaccccaaaaatatttttttgtccgaggattatcgctctgatacca 20600514  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 34805 - 34881
Alignment:
Q  241 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt---gtccgaggattattgctctgatac 316  Q
    |||||||||||| |||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||| ||||    
T  34805 acatcaatcaaa-gcatacatcatacgaattcgtcccaccc-aaaaatattttttgtccgaggattattgctctaatac 34881  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 147443 - 147519
Alignment:
Q  241 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt---gtccgaggattattgctctgatac 316  Q
    |||||||||||| |||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||| ||||    
T  147443 acatcaatcaaa-gcatacatcatacgaattcgtcccaccc-aaaaatattttttgtccgaggattattgctctaatac 147519  T

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