View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_2D_low_19 (Length: 204)
Name: NF1457_2D_low_19
Description: NF1457_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_2D_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 34501642 - 34501832
Alignment:
| Q |
15 |
gacatcattactttgacaaattcttagacaaattcatccgagtttgtagctttttgaagcaattatcaagagaaaa-ctaccacttttgatggtgcgtag |
113 |
Q |
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| T |
34501642 |
gacaccattactttgacaaattcttagacaaattcatccgagtttgtagctttttgaagcaattatcaagagaaaaactaccacttttgatggtgcgtag |
34501741 |
T |
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| Q |
114 |
ctctcccacaccaatgacgaataatcaagattctccatcaaagctaaaggaggagggaaagtagaatttgcaagatagaaataaattgaac |
204 |
Q |
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| T |
34501742 |
ctctcccacaccaatgacgaataatcaagattctccatcaaagctaaaggaggagggaaagtagaattggcaagatagaaataaattgaac |
34501832 |
T |
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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 3319241 - 3319379
Alignment:
| Q |
55 |
agtttgtagctttttgaagcaattatcaagagaaaactaccacttttgatggtgcgtagctctcccacaccaatgacgaataatcaagattctccatcaa |
154 |
Q |
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| T |
3319241 |
agttggtagctttttgaagcaattatcaagagaaaactatca-ttacgatggtgcatagctctccaacatcaatgacaaataatcaagattctccatcaa |
3319339 |
T |
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| Q |
155 |
agctaaaggaggagggaaagtagaatttgcaagatagaaa |
194 |
Q |
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| T |
3319340 |
agctaaaggaggagagaaagtagaattggcaagaaagaaa |
3319379 |
T |
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