View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_2D_low_4 (Length: 444)
Name: NF1457_2D_low_4
Description: NF1457_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_2D_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 47368149 - 47368574
Alignment:
| Q |
1 |
gggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtaggtataca |
100 |
Q |
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| T |
47368149 |
gggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtaggtataca |
47368248 |
T |
|
| Q |
101 |
tcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcgaaacttgctggcatgttgaacttgtccatgtgaattat |
200 |
Q |
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| T |
47368249 |
tcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcgaaacttgctggcatgttgaacttgtccatgtgaattat |
47368348 |
T |
|
| Q |
201 |
gtatgtccttttaagatgctgtgttttcttttctgctacggtgaatctgctagacaaaactagcagcaaagccatctgaagacacttgaaaatcagcata |
300 |
Q |
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| T |
47368349 |
gtatgtccttttaagatgttgtgttttcttttctgctatggtgaatctgctagacaaaactagcagcaaagccatctgaagacacttgaaaatcagcatg |
47368448 |
T |
|
| Q |
301 |
ttcatcttttagctccagtatgagagttgtagttttggcttctttttgaatttgctttagaattgcagggatagctggtatttattattggtttggaact |
400 |
Q |
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| T |
47368449 |
ttcatcttttagctccagtatgagagttgtagttttggcttctttttgaatttgctttagaattgcagggatagctggtatttattattggtttggaact |
47368548 |
T |
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| Q |
401 |
attgagtctgtggagattggtagatt |
426 |
Q |
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| T |
47368549 |
attgagtctgtggagattggtagatt |
47368574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 5374383 - 5374220
Alignment:
| Q |
43 |
gcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcat |
142 |
Q |
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|||||||| ||||||| ||||||||| | |||||||||| |||||||| || || | ||||||| || ||||||||||||||||| |||| ||| |
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| T |
5374383 |
gcttcttggttagttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcga |
5374284 |
T |
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| Q |
143 |
accattggagatgatcgtcgaaacttgctggcatgttgaacttgtccatgtgaattatgtatgt |
206 |
Q |
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| T |
5374283 |
accagttaaggtgatcagtgaatgtttctggcatggtggatttgtccatgtgaattatgtatgt |
5374220 |
T |
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