View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457_2D_low_5 (Length: 391)

Name: NF1457_2D_low_5
Description: NF1457_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457_2D_low_5
NF1457_2D_low_5
[»] chr5 (2 HSPs)
chr5 (1-286)||(4696813-4697098)
chr5 (1-286)||(4971398-4971683)
[»] chr1 (3 HSPs)
chr1 (1-286)||(12748507-12748792)
chr1 (1-283)||(24683530-24683812)
chr1 (232-286)||(37022814-37022868)
[»] chr7 (1 HSPs)
chr7 (1-286)||(39490245-39490530)
[»] chr3 (3 HSPs)
chr3 (1-286)||(27971263-27971548)
chr3 (1-286)||(6885625-6885910)
chr3 (1-286)||(33984876-33985161)
[»] chr4 (1 HSPs)
chr4 (1-286)||(3410897-3411182)
[»] chr6 (2 HSPs)
chr6 (1-286)||(20142350-20142635)
chr6 (1-286)||(22190204-22190489)
[»] chr8 (2 HSPs)
chr8 (1-257)||(8097308-8097564)
chr8 (2-259)||(12827701-12827962)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 4696813 - 4697098
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
4696813 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 4696912  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
4696913 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgagatagaggcatccgcaactcatctaaataa 4697012  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4697013 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 4697098  T

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Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 4971398 - 4971683
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
4971398 catctttcattgaacttctatacttattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 4971497  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
4971498 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattctggagatagaggcatccgcaactcatctaaataa 4971597  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4971598 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 4971683  T

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Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 12748792 - 12748507
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
12748792 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 12748693  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
12748692 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgagatagaggcatccgcaactcatctaaataa 12748593  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12748592 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 12748507  T

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Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 24683530 - 24683812
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||| | |    
24683530 catctttcattgaatttctatacttattcacaactcgggcgccaatactaaatgtagattctgatgccaccgttgttatggaaatactcaatatattgca 24683629  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||  | || |||||||||||||| |||||||||||    
24683630 agccatccttgcaggatttggacttatacgacttctttccttccaaaaagccaagacatcaaattctgcagattgaggcatccgcaacacatctaaataa 24683729  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaa 283  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||    
24683730 gtatcaagttcagatttttcggtgttgttactcgattggctttcatattcttcaaattcctataaatcacccgacctaaccaa 24683812  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 37022814 - 37022868
Alignment:
232 ttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||| |||| || |||||||||||||||||||||| |||||||| |||||||||    
37022814 ttgataggctgtcttattcttcaaattcctacaaatgatccaacccaaccaagtt 37022868  T

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Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 39490245 - 39490530
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
39490245 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 39490344  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
39490345 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgagatagaggcatccgcaactcatctaaataa 39490444  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39490445 gtatcaagttctgattttccggtgctgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 39490530  T

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Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 27971548 - 27971263
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
27971548 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 27971449  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
27971448 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgagatagaggcatccgcaactcatctaaataa 27971349  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
27971348 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacataaccaagtt 27971263  T

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Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6885625 - 6885910
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
6885625 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 6885724  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
6885725 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattctgcagatagaggcatccgcaactcatctaaataa 6885824  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
6885825 gtatcaagttctgattttccggtgttgctacttgattggctttcatactcttcaaattcctacaaatcatccaacctaaccaagtt 6885910  T

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Target: chr3; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 33985161 - 33984876
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
33985161 catctttcattgaacttatatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgca 33985062  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
33985061 aaccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattctgaagatagaggcatccgcaactcatctaaataa 33984962  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33984961 gtatcaagttctgattttccgatgttattacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 33984876  T

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Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 3410897 - 3411182
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
3410897 catctttcatttaacttctatacctattcacaactcgggcgccaatactaaacacagattctgatgccaccgttgttattggaatactcaatatatcgca 3410996  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
3410997 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgagatagaggcatccacaactcatctaaataa 3411096  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3411097 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 3411182  T

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Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 20142635 - 20142350
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |    
20142635 catctttcattgaacttctatacctattcacaacttgggcgccaatactaaacgtagattctaatgccactgttgttattggaatactcaatatatcgca 20142536  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||    
20142535 agccatccttgcaagatttggacttctgcgacttctttccttccaaaaagctaagacatcaaattccggagatagaggcatccgcaactcatctaaataa 20142436  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20142435 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 20142350  T

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Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 22190204 - 22190489
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |    
22190204 catctttcattgaacttctatacctattcacaacttgggcgccaatactaaacgtagattctaatgccactgttgttattggaatactcaatatatcgca 22190303  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||    
22190304 agccatccttgcaagatttggacttctgcgacttctttccttccaaaaagctaagacatcaaattcaagagatagaggcatccgcaactcatctaaataa 22190403  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22190404 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 22190489  T

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Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 8097308 - 8097564
Alignment:
1 catctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgta 100  Q
    |||||||||||||||| |||||| |||||| |||||| | ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| |    
8097308 catctttcattgaactactatacttattcagaactcgagagccaatactaaaaccatattctgatgccaccgttgttattggaatactcaatatatcgca 8097407  T
101 agccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaattcttgaaatagaggcatccgcaactcatctaaataa 200  Q
    || |||||||| |||||| ||||||||||||||||||||||||||| |||| |||| |||||||||    ||| ||||||||  ||||||||||||||||    
8097408 agtcatccttgtaagattaggacttctacgacttctttccttccaataagcaaagatatcaaattccaccaatggaggcatctacaactcatctaaataa 8097507  T
201 gtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaat 257  Q
    ||||||||||   |||||  ||||||| |||||  |||||||| | |||||||||||    
8097508 gtatcaagttgatatttttgggtgttggtacttacttggcttttaaattcttcaaat 8097564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 12827962 - 12827701
Alignment:
2 atctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgtaa 101  Q
    ||||||||| ||||||  |||| |||||  |||||| | ||||||| ||||  | |||||| ||||||| ||| |||||| |||||||||||||||| ||    
12827962 atctttcatggaacttacatacttattccgaactcgagagccaatattaaaaaccgattcttatgccactgtttttattgaaatactcaatatatcgcaa 12827863  T
102 gccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaag----acatcaaa-ttcttgaaatagaggcatccgcaactcatctaa 196  Q
    ||||||||| ||||||| ||||||| |||||||||||| |||||| |||| |||    | |||||| ||| |  | | |||||||  |||||||||||||    
12827862 gccatccttacaagattaggacttcaacgacttctttcgttccaataagccaagatatatatcaaatttcgtcgact-gaggcatttgcaactcatctaa 12827764  T
197 ataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattc 259  Q
    |||||||||||||||  ||||| | |||||| |||||| ||| || ||| |||||||||||||    
12827763 ataagtatcaagttcaaatttttcagtgttggtacttggttgactctcaaattcttcaaattc 12827701  T

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