View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_2D_low_6 (Length: 318)
Name: NF1457_2D_low_6
Description: NF1457_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_2D_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 37090761 - 37090919
Alignment:
| Q |
1 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
100 |
Q |
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| T |
37090761 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
37090860 |
T |
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| Q |
101 |
gcacttcccctttttgtcaccttcttcttaatattcacttttgtttcgctttcttcatc |
159 |
Q |
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| T |
37090861 |
gcacttcccctttttgtcaccttcttcttaatattcacttttgtttcgctttcttcatc |
37090919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 37097128 - 37097289
Alignment:
| Q |
1 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
100 |
Q |
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| T |
37097128 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
37097227 |
T |
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| Q |
101 |
gcacttcccctttttgtcaccttcttcttaatattcacttttgtttcgctttcttcatcttc |
162 |
Q |
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| T |
37097228 |
gcacttcccctttttgtcaccttcttcttaatattcacttttctttcactttcttcatcttc |
37097289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 153 - 301
Target Start/End: Complemental strand, 37090666 - 37090518
Alignment:
| Q |
153 |
cttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgagaagaagccagtggtaattgcaaagaa |
252 |
Q |
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| T |
37090666 |
cttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgagaagaagccagtggtaattgcaaagaa |
37090567 |
T |
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| Q |
253 |
gagaatgaagcttggaatggttaaagcccgttctatgatcagcttattg |
301 |
Q |
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| T |
37090566 |
gagaatgaagcttggaatggttaaagcccgttctatgatcagcttattg |
37090518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 153 - 301
Target Start/End: Complemental strand, 37097033 - 37096885
Alignment:
| Q |
153 |
cttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgagaagaagccagtggtaattgcaaagaa |
252 |
Q |
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| T |
37097033 |
cttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgagaagaagccagtggtaattgcaaagaa |
37096934 |
T |
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| Q |
253 |
gagaatgaagcttggaatggttaaagcccgttctatgatcagcttattg |
301 |
Q |
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| T |
37096933 |
gagaatgaagcttggaatggttaaagcccgatctatgagcagcttattg |
37096885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 23187339 - 23187434
Alignment:
| Q |
1 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccat |
96 |
Q |
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||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
23187339 |
ccctaaatgatgctcacaaagagaataaccaactagggtttgttgacaacacctccatcctcttccattaactcgactgcaccgcgaaccttccat |
23187434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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