View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_2D_low_9 (Length: 291)
Name: NF1457_2D_low_9
Description: NF1457_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_2D_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 37090785 - 37090518
Alignment:
| Q |
1 |
ttcactttgtgagcatcatttagggaaaggaaggttgagaagtatgacaagtgttagaaataggtctaatattggattttnnnnnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
37090785 |
ttcactttgtgagcatcatttagggaaaggaagattgagaagtatgacaagtgttagaaatagatctaatattggattttctactactactact------ |
37090692 |
T |
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| Q |
101 |
gaaccaaacaatgttgttgatagtgcttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgaga |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090691 |
gaaccaaacaatgctgttgatagtgcttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgaga |
37090592 |
T |
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| Q |
201 |
agaagccagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgttctatgatcagcttattg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090591 |
agaagccagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgttctatgatcagcttattg |
37090518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 37097152 - 37096885
Alignment:
| Q |
1 |
ttcactttgtgagcatcatttagggaaaggaaggttgagaagtatgacaagtgttagaaataggtctaatattggattttnnnnnnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37097152 |
ttcactttgtgagcatcatttagggaaaggaagattgagaagtatgacaagtgttagaaatagatctaatattggattttctactactactact------ |
37097059 |
T |
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| Q |
101 |
gaaccaaacaatgttgttgatagtgcttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgaga |
200 |
Q |
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| T |
37097058 |
gaaccaaacaatgctgttgatagtgcttcatcttctaattctgatcttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgaga |
37096959 |
T |
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| Q |
201 |
agaagccagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgttctatgatcagcttattg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
37096958 |
agaagccagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttattg |
37096885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 23187359 - 23187296
Alignment:
| Q |
5 |
ctttgtgagcatcatttagggaaaggaaggttgagaagtatgacaagtgttagaaataggtcta |
68 |
Q |
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| T |
23187359 |
ctttgtgagcatcatttagggaaaggaagattgagaagcatgacaagtgtaagaaataggtcta |
23187296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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