View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14580_high_2 (Length: 348)
Name: NF14580_high_2
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14580_high_2 |
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| [»] scaffold0043 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 24283964 - 24283644
Alignment:
| Q |
10 |
tgagatgaaaatgctacagaaagattgcaatcgaagcattaggagtatcaataggcttaataatagccatttcaaacatcaatagaatcttctgaatata |
109 |
Q |
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| T |
24283964 |
tgagatgcaaatgctacagacagattgcattcgaagcattaggagtatcaataggcttagcagtagccattccaaacctcgatagaatcttcttaatata |
24283865 |
T |
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| Q |
110 |
tctcttatgtgacacaagaaaagcttcttcggagttctatccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgatt |
209 |
Q |
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| T |
24283864 |
tctcttatgtgaca--agaaaagcttcttcggagttctatccatgtagatctccattcccataattttcttagtaacacccaaatccttcatttccaatt |
24283767 |
T |
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| Q |
210 |
ttgtactgagtagccccttaagattttcaaaatcagacttcttctctgcaactagcaacatatcatcaacatacaacaccaaatagatgaaggaaccatt |
309 |
Q |
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|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24283766 |
atgtactgagtagccccttaagattttgaatatgagacttcttctctgcaactagcaacatatcatcaacagacaacaccaaatagatgaaggaaccatt |
24283667 |
T |
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| Q |
310 |
tttgagcttgttgtagtagacac |
332 |
Q |
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| T |
24283666 |
tttgagcttgttgtagtagacac |
24283644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 128 - 332
Target Start/End: Complemental strand, 84653 - 84451
Alignment:
| Q |
128 |
aaaagcttcttcggagttctatccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgattttgtactgagtagcccct |
227 |
Q |
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| T |
84653 |
aaaagcttcttcggtcttatatccctgtagatatccattccttgaattttcttagtagcatccaaatccttcatt-caaattatgtactgagtagctcct |
84555 |
T |
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| Q |
228 |
taagattttcaaaatcagacttcttctctgcaactagcaacatatcatcaacatacaacaccaaatagatgaaggaaccatttttgagcttgttgtagta |
327 |
Q |
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| T |
84554 |
taagcttttgaatatcagactt-ttatctgcagctaggaagatgtcatctacgtacaacaacaaattgatgaaggaaccatttttgaggttgttgtagta |
84456 |
T |
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| Q |
328 |
gacac |
332 |
Q |
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| T |
84455 |
gacac |
84451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 81127 - 81067
Alignment:
| Q |
272 |
tcatcaacatacaacaccaaatagatgaaggaaccatttttgagcttgttgtagtagacac |
332 |
Q |
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| T |
81127 |
tcatctacgtacaacaacaaattgatgaatgaaccatttttgaggttgttgtagtagacac |
81067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 332
Target Start/End: Original strand, 27337156 - 27337333
Alignment:
| Q |
149 |
tccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgattttgtactgagtagccccttaagattttcaaaatcagact |
248 |
Q |
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| T |
27337156 |
tccctatagatatccattccttgaattttcttagtagcatccaaatccttcatt-caaattatgtact----agctccttcagcttttgaatatcagact |
27337250 |
T |
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| Q |
249 |
tcttctctgcaactagcaacatatcatcaacatacaacaccaaatagatgaaggaaccatttttgagcttgttgtagtagacac |
332 |
Q |
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| T |
27337251 |
t-ttatctgcagctaggaagatgtcatctacgtacaacaacaaattgatgaaggaaccatttttgaggttgttgtagtagacac |
27337333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 18732108 - 18732011
Alignment:
| Q |
125 |
aagaaaagcttcttcggagttctatccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgattttgtactgagtagc |
223 |
Q |
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| T |
18732108 |
aagaaaagcttcttcggtcttatatccctgtagatatccattccttgagttttcttagtagcatccaaatccttca-ttcaaattatgtactgagtagc |
18732011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 18727955 - 18727895
Alignment:
| Q |
272 |
tcatcaacatacaacaccaaatagatgaaggaaccatttttgagcttgttgtagtagacac |
332 |
Q |
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| T |
18727955 |
tcatctacgtacaacaacaaattgatgaatgaaccatttttgaggttgttgtagtagacac |
18727895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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