View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14580_high_6 (Length: 229)
Name: NF14580_high_6
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14580_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 21787664 - 21787870
Alignment:
| Q |
15 |
caaaggaccatatttaaatagcatgaagaaaatctgtataacaaaccacactcctctaaaatctaacctagataccaaaatccaacataaccaaataccc |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21787664 |
caaaggaccatatttgaatagcatgaagaaaatctgtataacaaaccacactcctctaaagtctaacctagattccaaaatccaacataaccaaataccc |
21787763 |
T |
|
| Q |
115 |
taatataaggttatagtgtatgcatagacgatacaaaggtcatcaatgctaccatcaatatcaaattaaaacctcaacctcaaagtttaattttgaatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
21787764 |
taatataaggttatagtgtatgcatagacgatacaaaggtcatcaatgctgccatcaatatcaaattaaaaactcaacctcaaagtttaattttgattct |
21787863 |
T |
|
| Q |
215 |
aaaagga |
221 |
Q |
| |
|
||||||| |
|
|
| T |
21787864 |
aaaagga |
21787870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University