View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14580_high_7 (Length: 224)
Name: NF14580_high_7
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14580_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7175651 - 7175434
Alignment:
| Q |
1 |
ttttagattttctgtagtatgaacgaatgagtgacaaaatgtattcccacattactagactacaagtacttgttgctttcgaaagatataagcatgctat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7175651 |
ttttagattttctgtagtttgaacgaatgagtgacaaaatgtattcccacattactagactacaagtacttgttgctttcggaagatataagcatgctat |
7175552 |
T |
|
| Q |
101 |
ttattctaaattcgatttttactgcagtttaaaaatataggtttaattatacttttcttcatttatctttaatccaaaatttgttttaatctgttatcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
7175551 |
ttattctaaattcgatttttactgcagtttaaaaatataggtttaattatacttttcttcatttatctttaatccaaaatttgttctaatctcttatcta |
7175452 |
T |
|
| Q |
201 |
ttttttattattcctttg |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7175451 |
ttttttattattcctttg |
7175434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 7187191 - 7187034
Alignment:
| Q |
1 |
ttttagattttctgtagtatgaa-cgaatgagtga--caaaatgtattcccacattactagactacaagtacttgttgctttcgaaagatataagcatgc |
97 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| | ||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
7187191 |
ttttagattttcaatagtatgaaacgaatgagtggggctgaatttattcccacataactagacaacaagtacttgttgttttcgaaagatataagcatga |
7187092 |
T |
|
| Q |
98 |
tattt--attctaaattcgatttttactgcagtttaaaaatataggtttaattatactt |
154 |
Q |
| |
|
||| | |||||||| |||| | || ||||| |||||| |||||||||||||||||| |
|
|
| T |
7187091 |
tatctccattctaaa-tcgaatattcctgcactttaaactaataggtttaattatactt |
7187034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University