View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14580_low_2 (Length: 448)
Name: NF14580_low_2
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14580_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 29865590 - 29865170
Alignment:
| Q |
20 |
atcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaacccggca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29865590 |
atcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaacccggca |
29865491 |
T |
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| Q |
120 |
ctcctgctggttgagcctgattgtcccgaaatcgtagttccacaacccatcaattcctcatcctcttcgtccacagacgattgatgcggctgagttccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29865490 |
ctcctgctggttgagcctgattgtcccgaaatcgtagttccacaacccatcaattcctcatcctcttcgtccacagacgattgatgcggctgagttccca |
29865391 |
T |
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| Q |
220 |
tctatcgtgaccagtttcgattttgaagctaaattgatcgaacacgaagggagaaaaaccctagggcacgcaatatgaagaaggaatgtgaatacgaaat |
319 |
Q |
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| T |
29865390 |
tctatcgtgaccagtttcgattttgaagctaaattgatcgaacacgaagggagaaaaaccctagggcacgcaatatgaagaaggaatgtgaatacgaaat |
29865291 |
T |
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| Q |
320 |
tgaaaaattnnnnnnnnnnnnnnnnngggaggtggggttgtgatggattaacgacagcggttattggcgagggaaagaggagatctttgggaacgcgggg |
419 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29865290 |
tgaaaaatt----gagagagagagaggggaggtggggttgtgatggattaacgacggcggttattgacgagggaaagaggagatctttgggaacgcgggg |
29865195 |
T |
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| Q |
420 |
gcacgaaatacgaatacggtttcat |
444 |
Q |
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| T |
29865194 |
gcacgaaatacgaatacggtttcat |
29865170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 29871141 - 29870951
Alignment:
| Q |
20 |
atcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaacccg--- |
116 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||| || |||||||||| ||||||| |
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| T |
29871141 |
atcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgtcccaatcgtctgctcgcttcggctagacgctaacccgccg |
29871042 |
T |
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| Q |
117 |
gcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaacccatcaattcctcatcctcttcgtccacagacgattgatgcg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||| ||||||| |||| |
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| T |
29871041 |
gcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcctcctcatcttcgtcgacacacgattgctgcg |
29870951 |
T |
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