View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14580_low_4 (Length: 269)
Name: NF14580_low_4
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14580_low_4 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 812395 - 812244
Alignment:
| Q |
106 |
gggagcaaggacaatgatacgaaatgaaagtaatttggatatactttgaaacctgaattcgatctgagcttaattcatggcatagtgatgttgaagtcaa |
205 |
Q |
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| T |
812395 |
gggagcaaggacaatgatacgaaatgaaagtaatttggatatactttgaaacctgaattcgatctgagcttaattcatggcatagtgatgttgaagtcaa |
812296 |
T |
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| Q |
206 |
actaacatggctatcatgaatca---acaaggtaccaggttgttaagtacat |
254 |
Q |
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| T |
812295 |
actaacatggctatcatgaatcaacaacaaggtaccaggttgttaagtacat |
812244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 811667 - 811603
Alignment:
| Q |
191 |
tgatgttgaagtcaaactaacatggctatcatgaatcaacaaggtaccaggttgttaagtacatg |
255 |
Q |
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| T |
811667 |
tgattttgaagtcagactaacattgctagcatgaatcaactaggtacgaggttgtcaagtacatg |
811603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 1031820 - 1031858
Alignment:
| Q |
107 |
ggagcaaggacaatgatacgaaatgaaagtaatttggat |
145 |
Q |
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| T |
1031820 |
ggagcaaagacaatgatacgaaatgaaagtaatttggat |
1031858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 812486 - 812442
Alignment:
| Q |
1 |
aaaataataagagtggaagaa-gaggatgggtattttctatgtcg |
44 |
Q |
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| T |
812486 |
aaaataataagagtggaagaagggggatgggtattttctatgtcg |
812442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 22656 - 22694
Alignment:
| Q |
107 |
ggagcaaggacaatgatacgaaatgaaagtaatttggat |
145 |
Q |
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| T |
22656 |
ggagcaaagacaatgatacgaaatgaaagtaatttggat |
22694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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