View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14580_low_5 (Length: 257)
Name: NF14580_low_5
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14580_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 49379640 - 49379453
Alignment:
| Q |
18 |
gcagagatattaatggtattgattataaaatgaacagcttgtgtattctgtgctggacatgattgaacattatgttttcttaatataatgttaccccttt |
117 |
Q |
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| T |
49379640 |
gcagagatattaatggtattgattataaaatgaacagcttgtgtattttgtgctggacatgattgaacattatgttttcttaatataatgttaccccttt |
49379541 |
T |
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| Q |
118 |
ccaaccaaaacattagtgacaaaattgtttattgccctcagttacttgtgattctgatcaatcctgaagaaataataagaaactctta |
205 |
Q |
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| T |
49379540 |
ccaaccaaaacattagtgacaaaattgtttattgccctcagttacttgtgattctgatcaatcctgaagaaataataagaaactctta |
49379453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 49379405 - 49379377
Alignment:
| Q |
205 |
aattaaaacaaactcctatttagctatgc |
233 |
Q |
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| T |
49379405 |
aattaaaacaaactcctatttagctatgc |
49379377 |
T |
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