View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14580_low_6 (Length: 234)

Name: NF14580_low_6
Description: NF14580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14580_low_6
NF14580_low_6
[»] chr3 (11 HSPs)
chr3 (7-234)||(36070473-36070700)
chr3 (161-234)||(27538886-27538959)
chr3 (162-227)||(41760258-41760323)
chr3 (162-229)||(51882967-51883034)
chr3 (165-225)||(51464535-51464595)
chr3 (160-231)||(2289186-2289257)
chr3 (162-229)||(25328738-25328805)
chr3 (161-231)||(25807307-25807377)
chr3 (165-222)||(3569921-3569978)
chr3 (164-229)||(21630267-21630332)
chr3 (161-229)||(14241346-14241414)
[»] chr4 (6 HSPs)
chr4 (160-234)||(17489396-17489470)
chr4 (163-229)||(16598731-16598797)
chr4 (162-227)||(31924729-31924794)
chr4 (160-231)||(21279329-21279400)
chr4 (162-225)||(44473074-44473137)
chr4 (161-229)||(10987873-10987941)
[»] chr1 (8 HSPs)
chr1 (162-229)||(24307038-24307105)
chr1 (161-229)||(1763190-1763258)
chr1 (165-229)||(6148393-6148457)
chr1 (162-229)||(15969372-15969439)
chr1 (162-229)||(16044827-16044894)
chr1 (161-227)||(15199273-15199339)
chr1 (160-229)||(32924886-32924954)
chr1 (162-222)||(46137515-46137575)
[»] chr6 (4 HSPs)
chr6 (161-234)||(7655195-7655268)
chr6 (165-229)||(16227233-16227297)
chr6 (165-225)||(23666999-23667059)
chr6 (161-225)||(25823592-25823656)
[»] scaffold0356 (1 HSPs)
scaffold0356 (162-229)||(5936-6003)
[»] chr5 (3 HSPs)
chr5 (163-222)||(33851943-33852002)
chr5 (165-224)||(25803115-25803174)
chr5 (161-222)||(42461912-42461973)
[»] chr2 (2 HSPs)
chr2 (160-234)||(29557275-29557349)
chr2 (162-225)||(21862622-21862685)
[»] chr8 (6 HSPs)
chr8 (162-227)||(33858276-33858341)
chr8 (162-229)||(44549303-44549370)
chr8 (162-229)||(10540189-10540256)
chr8 (164-220)||(15999497-15999553)
chr8 (165-229)||(27916803-27916867)
chr8 (165-229)||(27963222-27963286)
[»] scaffold0741 (1 HSPs)
scaffold0741 (164-225)||(6778-6839)
[»] chr7 (3 HSPs)
chr7 (165-225)||(6670425-6670485)
chr7 (161-225)||(26178085-26178149)
chr7 (161-229)||(7810392-7810460)
[»] scaffold0044 (1 HSPs)
scaffold0044 (162-208)||(63626-63672)
[»] scaffold0196 (1 HSPs)
scaffold0196 (161-229)||(31192-31260)
[»] scaffold0073 (1 HSPs)
scaffold0073 (165-225)||(29465-29524)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 36070473 - 36070700
Alignment:
Q  7 cctacaaattataaaaagttttaattttatcttcnnnnnnnatttaatatcacatgcactaaatatttttgaaacttcaaagttttttgaagtgaaataa 106  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  36070473 cctacaaattataaaaagttttaattttatcttctttttttatttaatatcacccgcactaaatatttttggaacttcaaagttttttgaagtgaaataa 36070572  T
Q  107 aaattttcactggaatgcttggcggaaaattctagaaatttaannnnnnnnnccgataaggccaagagaaaggttgggtatttgggagaatatgaagcat 206  Q
    || |||||||||||||||||||||||||||||||||| |||||          |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36070573 aatttttcactggaatgcttggcggaaaattctagaattttaatcttttttttcgataaggccaagagaaaggttgggtatttgggagaatttgaagcat 36070672  T
Q  207 cctaattaggttggcacccaacaaattc 234  Q
    ||||||||||||||||||||||||||||    
T  36070673 cctaattaggttggcacccaacaaattc 36070700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 27538886 - 27538959
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaattc 234  Q
    |||||||||||||||||||||||| ||  |||||||| |||||||||| || |||||||||| |||||| ||||    
T  27538886 gataaggccaagagaaaggttgggcatccgggagaatctgaagcatccaaactaggttggcatccaacagattc 27538959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 41760258 - 41760323
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaa 227  Q
    ||||||||||||||||||||||| ||  |||||| | |||||||||| || |||||||||||||||    
T  41760258 ataaggccaagagaaaggttgggcatccgggagagtctgaagcatcccaactaggttggcacccaa 41760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 51883034 - 51882967
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||| ||||||||||||||| || | ||||||| |||||||||| || |||||||||||| ||||    
T  51883034 ataaggctaagagaaaggttgggcatcttggagaatctgaagcatcccaactaggttggcaccaaaca 51882967  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 51464535 - 51464595
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    |||| ||||||||||||||| ||  |||||||| |||||||||| || |||||||||||||    
T  51464535 aggctaagagaaaggttgggcatccgggagaatctgaagcatcccaactaggttggcaccc 51464595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 2289186 - 2289257
Alignment:
Q  160 cgataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaa 231  Q
    ||||||||||||||||||||||||| ||  |||||||| |  ||||| | || ||||||||||||| |||||    
T  2289186 cgataaggccaagagaaaggttgggcatccgggagaatctacagcataccaactaggttggcaccccacaaa 2289257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 25328805 - 25328738
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||| |||||||||||  | |||  | |||||| |||||||||| ||||||||||||||||||||    
T  25328805 ataaggcaaagagaaaggtgagatatccgagagaatgtgaagcatcccaattaggttggcacccaaca 25328738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 25807307 - 25807377
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaa 231  Q
    ||||||||||| ||||||||| || || | ||||| | |||||||||| |  |||||||||||||||||||    
T  25807307 gataaggccaaaagaaaggttaggcatctaggagagtctgaagcatcccagctaggttggcacccaacaaa 25807377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 3569921 - 3569978
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggca 222  Q
    ||||||||||||| ||| || ||  |||||||| ||||||||||||| ||||||||||    
T  3569921 aggccaagagaaatgttaggcatccgggagaatctgaagcatcctaactaggttggca 3569978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 21630332 - 21630267
Alignment:
Q  164 aaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    |||||||||||||||||| |||||  ||| || | |||||||||| || |||||||||| ||||||    
T  21630332 aaggccaagagaaaggtttggtatccgggcgagtctgaagcatcccaactaggttggcatccaaca 21630267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 14241346 - 14241414
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    |||||||||||||||||||||||| ||   ||||| | | |||||||  || |||||||||||||||||    
T  14241346 gataaggccaagagaaaggttgggcatccaggagagtctaaagcatcgaaactaggttggcacccaaca 14241414  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 17489470 - 17489396
Alignment:
Q  160 cgataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaattc 234  Q
    ||||||||||||||||||||||||||||  ||||||||  ||||||||| || ||||||| ||||||||||||||    
T  17489470 cgataaggccaagagaaaggttgggtatccgggagaatcagaagcatcccaactaggttgacacccaacaaattc 17489396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 16598731 - 16598797
Alignment:
Q  163 taaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    |||||||||||||||||||||||||  |||||||| |||| ||||| || |||||||||||||||||    
T  16598731 taaggccaagagaaaggttgggtatccgggagaatttgaaacatcccaactaggttggcacccaaca 16598797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 31924794 - 31924729
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaa 227  Q
    ||||||||||||||||||||||| ||  |||||| | |||||||||| || |||||||||||||||    
T  31924794 ataaggccaagagaaaggttgggcatccgggagagtctgaagcatcccaactaggttggcacccaa 31924729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 21279400 - 21279329
Alignment:
Q  160 cgataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaa 231  Q
    |||||||||||||||||||||| || || ||| | |||  ||||||||| || |||||||||||||||||||    
T  21279400 cgataaggccaagagaaaggttaggcatatggaaaaatccgaagcatcccaactaggttggcacccaacaaa 21279329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 44473137 - 44473074
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    |||||||||||||||||||| || ||  |||||||| |||||||| | ||||||||||||||||    
T  44473137 ataaggccaagagaaaggttaggcatccgggagaatctgaagcattccaattaggttggcaccc 44473074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 10987873 - 10987941
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||||  || ||  ||||||   |||||||||| || |||||||||||||||||    
T  10987873 gataaggccaagagaaaggtgaggcatccgggagagactgaagcatcccaactaggttggcacccaaca 10987941  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 24307038 - 24307105
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    |||||||||| |||||||||||||||  |||||||| | ||||||||||| |||||||||||||||||    
T  24307038 ataaggccaatagaaaggttgggtatccgggagaatttaaagcatcctaactaggttggcacccaaca 24307105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 1763258 - 1763190
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||| |||||| ||  |||||| | | |||||||| ||||||||||||||||||||    
T  1763258 gataaggccaagagaaaagttgggcatccgggagagtcttaagcatcccaattaggttggcacccaaca 1763190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 6148393 - 6148457
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||| ||||||| |||||  |||||||| ||||| |||| || |||||||||||||||||    
T  6148393 aggccaagataaaggttaggtatcagggagaatctgaagtatcccaactaggttggcacccaaca 6148457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 15969439 - 15969372
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||   || ||| ||||||   ||||||||||||| |||||||||||||||||    
T  15969439 ataaggccaagagaaaggggaggcattcgggagagactgaagcatcctaactaggttggcacccaaca 15969372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 16044894 - 16044827
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||||||| ||  |||||| | ||||  |||| || |||||||||||||||||    
T  16044894 ataaggccaagagaaaggttgggcatccgggagagtctgaaagatcccaactaggttggcacccaaca 16044827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 15199273 - 15199339
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaa 227  Q
    ||||| ||||| ||||||||| || ||  |||||||| |||||||||| || |||||||||||||||    
T  15199273 gataaagccaatagaaaggttaggcatccgggagaatttgaagcatcccaactaggttggcacccaa 15199339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 32924886 - 32924954
Alignment:
Q  160 cgataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||| ||||||||||| || || ||  |||||||| |||||||||| || |||||||||||||||||    
T  32924886 cgataagtccaagagaaag-ttaggcatccgggagaatctgaagcatcccaactaggttggcacccaaca 32924954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 46137575 - 46137515
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggca 222  Q
    |||||| |||||||||||||||| ||  ||| |||| ||||||||  ||||||||||||||    
T  46137575 ataaggtcaagagaaaggttgggcatccgggggaatctgaagcattttaattaggttggca 46137515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 7655268 - 7655195
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaattc 234  Q
    |||||||||||||||||| ||||||||  |||||||| |||||||||| || |||||||||||| |||| ||||    
T  7655268 gataaggccaagagaaagcttgggtatccgggagaatctgaagcatcccaactaggttggcacctaacagattc 7655195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 16227297 - 16227233
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    |||||||||||||||| |||||| ||||  | | |||||||||| || |||||||||||||||||    
T  16227297 aggccaagagaaaggtagggtatctgggcaattctgaagcatcccaactaggttggcacccaaca 16227233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 23666999 - 23667059
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    ||||||||||||||||| || ||  |||||||| |||||||||| || |||||||||||||    
T  23666999 aggccaagagaaaggttaggcatccgggagaatttgaagcatcccaactaggttggcaccc 23667059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 25823656 - 25823592
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    ||||||||||||||||||||| || ||  |||||||| ||| |||| | || |||||||||||||    
T  25823656 gataaggccaagagaaaggttaggcatccgggagaatctgaggcattccaactaggttggcaccc 25823592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 5936 - 6003
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||||||| ||  |||||| | |||||||||| || |||||||||||||||||    
T  5936 ataaggccaagagaaaggttgggcatccgggagagtctgaagcatcccaactaggttggcacccaaca 6003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 33851943 - 33852002
Alignment:
Q  163 taaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggca 222  Q
    |||||||||||||||||||||||||  |||||||| |||||||||| || ||||||||||    
T  33851943 taaggccaagagaaaggttgggtatccgggagaatctgaagcatcccaactaggttggca 33852002  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 25803174 - 25803115
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacc 224  Q
    |||||||||||||||||||| ||  |||||||| |||||||||| || ||||||||||||    
T  25803174 aggccaagagaaaggttgggcatccgggagaatctgaagcatcccaactaggttggcacc 25803115  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 42461912 - 42461973
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggca 222  Q
    ||||||| ||| |||||||||||| ||  |||||||| || |||||||||||||||||||||    
T  42461912 gataaggtcaaaagaaaggttgggcatccgggagaatctgcagcatcctaattaggttggca 42461973  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 29557349 - 29557275
Alignment:
Q  160 cgataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaacaaattc 234  Q
    ||||||||||||||||||||||||||||  || ||||| |||| ||||  || ||||||||||||||||| ||||    
T  29557349 cgataaggccaagagaaaggttgggtatccggcagaatctgaaacatctcaactaggttggcacccaacagattc 29557275  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 21862685 - 21862622
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    ||||||| ||||||||||||||| ||  |||||||| |||||||| | || |||||||||||||    
T  21862685 ataaggctaagagaaaggttgggcatccgggagaatctgaagcattccaactaggttggcaccc 21862622  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 33858276 - 33858341
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaa 227  Q
    ||||||||||||||||||||||| ||  |||||| | |||||||||| || |||||||||||||||    
T  33858276 ataaggccaagagaaaggttgggcatccgggagagtctgaagcatcccaactaggttggcacccaa 33858341  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 44549303 - 44549370
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||||||| ||  ||| |||| | |||||||| || |||||||||||||||||    
T  44549303 ataaggccaagagaaaggttgggcatccgggcgaatcttaagcatcccaactaggttggcacccaaca 44549370  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 10540256 - 10540189
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    |||||||||||||||||||  |||||| | ||| ||||||| ||||| || || ||||||||||||||    
T  10540256 ataaggccaagagaaaggtcaggtattcgagaggatatgaaacatcccaactaagttggcacccaaca 10540189  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 15999497 - 15999553
Alignment:
Q  164 aaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttgg 220  Q
    ||||||||||||||||||||| ||  |||||| | |||||||||| || ||||||||    
T  15999497 aaggccaagagaaaggttgggcatccgggagagtctgaagcatcccaactaggttgg 15999553  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 27916867 - 27916803
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||  || ||  |||||||  |||||||||| || |||||||||||||||||    
T  27916867 aggccaagagaaaggtgaggcatccgggagaaactgaagcatcccaactaggttggcacccaaca 27916803  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 27963286 - 27963222
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||  || ||  |||||||  |||||||||| || |||||||||||||||||    
T  27963286 aggccaagagaaaggtgaggcatccgggagaaactgaagcatcccaactaggttggcacccaaca 27963222  T

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Target: scaffold0741 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 6839 - 6778
Alignment:
Q  164 aaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    ||||||||||||||||||||| || ||| ||||| || ||||||| || |||||||||||||    
T  6839 aaggccaagagaaaggttgggcatctggaagaatctgcagcatcccaactaggttggcaccc 6778  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 6670425 - 6670485
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    |||||||||||||||||||| ||   ||||||| |||||||||| || |||||||||||||    
T  6670425 aggccaagagaaaggttgggcatcctggagaatctgaagcatcccaactaggttggcaccc 6670485  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 26178149 - 26178085
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    |||||| ||||||||||||||||| ||  |||||||| || ||||||| || |||||||||||||    
T  26178149 gataagaccaagagaaaggttgggcatccgggagaatctgcagcatcccaactaggttggcaccc 26178085  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 7810392 - 7810460
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||||| |  ||  |||||||| ||||| |||| |  |||||||||||||||||    
T  7810392 gataaggccaagagaaaggttagacatccgggagaatctgaagtatcccagctaggttggcacccaaca 7810460  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 63672 - 63626
Alignment:
Q  162 ataaggccaagagaaaggttgggtatttgggagaatatgaagcatcc 208  Q
    ||||||||||||||||||||||| || ||||||| | ||||||||||    
T  63672 ataaggccaagagaaaggttgggcatctgggagagtctgaagcatcc 63626  T

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Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 31192 - 31260
Alignment:
Q  161 gataaggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcacccaaca 229  Q
    ||||||||||||||||||||  || ||  ||||||   |||||||||| || |||||||||||||||||    
T  31192 gataaggccaagagaaaggtgaggcatccgggagagactgaagcatcccaactaggttggcacccaaca 31260  T

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Target: scaffold0073 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 29465 - 29524
Alignment:
Q  165 aggccaagagaaaggttgggtatttgggagaatatgaagcatcctaattaggttggcaccc 225  Q
    ||||||| |||||||| ||| ||  |||||||| |||||||||| ||||||||||||||||    
T  29465 aggccaaaagaaaggt-gggcatccgggagaatctgaagcatcccaattaggttggcaccc 29524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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