View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14581_low_10 (Length: 312)
Name: NF14581_low_10
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 53049398 - 53049118
Alignment:
| Q |
18 |
catttaacctgtaaagaataaagtaaagnnnnnnnnnngacaaggttatatgttgacattgtcataatagtatacctctcgtttagtcacgtcaatgtct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53049398 |
catttaacctgtaaagaataaagtaaagaaaaaaaaaagacaaggttatatgttgacattgtcatgatagtatacctctcgtttagtcacgtcaatgtct |
53049299 |
T |
|
| Q |
118 |
ggcataggatctgtagaatctgttttaacactttcatatgggtaaactggaagaccttcattatcttcaggttcaccctcgttcacatcttcctgtatag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53049298 |
ggcataggatctgtagaatctgttttaacactttcatatgggtaaactggaagaccttcattatcttcaggttcaccctcgttcacatcttcctgtatag |
53049199 |
T |
|
| Q |
218 |
taagagattcttctcggctgcccgtagaattctcattgtcactatttgtctcagggtttgatttggaagtatctgtgctcc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53049198 |
taagagattcttctcggctgcccgtagaattctcattgtcactgtttgtctcagggtttgatttggaagtatctgtgctcc |
53049118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 15956758 - 15956896
Alignment:
| Q |
90 |
tacctctcgtttagtcacgtcaatgtctggcataggatctgtagaatctgttttaacactttcatatgggtaaactggaagaccttcattatcttcaggt |
189 |
Q |
| |
|
|||||||| |||||| || ||||||||||||| |||||||||||| | |||||| | |||||||||||||| | |||||||| | |||||||| | |
|
|
| T |
15956758 |
tacctctcttttagttacatcaatgtctggcacaggatctgtagatgttattttaaggcgttcatatgggtaaatcaggagaccttcctcatcttcagct |
15956857 |
T |
|
| Q |
190 |
tcaccctcgttcacatcttcctgtatagtaagagattct |
228 |
Q |
| |
|
|| || || ||||||||||| | ||| |||||||||||| |
|
|
| T |
15956858 |
tcgccttctttcacatcttcttctatggtaagagattct |
15956896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University