View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_11 (Length: 307)
Name: NF14581_low_11
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 32929729 - 32929476
Alignment:
| Q |
15 |
caaaggctcacaattaatttgtatnnnnnnnnttgaacagaataaaaaataatataaagtggcattcttaatcatttannnnnnncaaactaacgcagac |
114 |
Q |
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| T |
32929729 |
caaaggctcacaattaatttgtataaaaaaaattgaacagaataaaaaataatataaagtggcattcttaatcatttatttttttcaaactaacgcagac |
32929630 |
T |
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| Q |
115 |
cgttatattttcatatcatatatcaaatgtattccgcattttgctagaagttattcttcatagtattagacattttttagtcaaatagttgtttgataat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32929629 |
cgttatattttcatatcatatatcaaatgtattccgcactttgttagaagttattcttcatagtatttgacattttttagtcaaatagttgtttgataat |
32929530 |
T |
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| Q |
215 |
atgtttatgtctctttcgacttaatcaaaagttatgaatttgaactaaacatat |
268 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32929529 |
atgtttatgtctctttcggcttaatcaaaagttatgaatttgaactaaacatat |
32929476 |
T |
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