View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14581_low_12 (Length: 274)
Name: NF14581_low_12
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 48966374 - 48966463
Alignment:
| Q |
138 |
gtgatatgttagatgaatgacctttaccaaaattttcatgctaatcaatctatcaaatcatcatcttactatgatattgaggttatattct |
228 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966374 |
gtgatatattagatgaatgacctttaccaaaattttcatgctaatcaatcaatc-tatcatcatcttactatgatattgaggttatattct |
48966463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 48966496 - 48966531
Alignment:
| Q |
227 |
ctcctaaagtaacgtgctcattctttaattattatt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966496 |
ctcctaaagtaacgtgctcattctttaattattatt |
48966531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University