View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_15 (Length: 245)
Name: NF14581_low_15
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26642961 - 26643196
Alignment:
| Q |
1 |
tggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaacttttcactggcatcgattacttcacgttctggt |
100 |
Q |
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| T |
26642961 |
tggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaacttttcactggcatcgattacttcacgttctggt |
26643060 |
T |
|
| Q |
101 |
atatcttcattcgtttgcattgaacattcaaatgctgtttattgcactggcaagcatgtttaagtttaactacatcacgtacacatcattttcacaatat |
200 |
Q |
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| T |
26643061 |
atatcttcattcgtttgcattgaacattcaaatgctgtttattgcactggcaagcatgtttaagtttaactacatcacgtacacatcattttcacaatat |
26643160 |
T |
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| Q |
201 |
gctattcgaaatttgaagagaatagtttctaattca |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26643161 |
gctattcgaaatttgaagagaatagtttctaattca |
26643196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26656430 - 26656559
Alignment:
| Q |
1 |
tggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaacttttcactggcatcgattacttcacgttctggt |
100 |
Q |
| |
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||||||||||| |||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||| |
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| T |
26656430 |
tggaagagacgcgattcctgaaaatttgaaggctaatgctatcagcgagattactaggctcaggaattttgcactgacatcaattacttcacgttctggt |
26656529 |
T |
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| Q |
101 |
atatcttcattcgtttgcattgaacattca |
130 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
26656530 |
atatcttcattggtttgcattgaacattca |
26656559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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