View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_16 (Length: 240)
Name: NF14581_low_16
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26642969 - 26642768
Alignment:
| Q |
1 |
tctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacac |
100 |
Q |
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| T |
26642969 |
tctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacac |
26642870 |
T |
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| Q |
101 |
aagaaattcaaatttcaaaaactaaaagtgacgaaaactacagaattatattcaaaactaataagtccatttcagaaaatgcattaactaagctaaatct |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642869 |
aagaaattcaaatttc--aaactaaaagtgacgaaaactacagaattttattcaaaactaataagtccatttcagaaaatgcattaactaagctaaatct |
26642772 |
T |
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| Q |
201 |
cgaa |
204 |
Q |
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|||| |
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| T |
26642771 |
cgaa |
26642768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 26656438 - 26656303
Alignment:
| Q |
1 |
tctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacac |
100 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| |
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| T |
26656438 |
tctcttccaagcttttgaacattgttatttccaatgcacctcaatgcattttcacatgcctattcaccaaacaataattactaattatgcattcaaacac |
26656339 |
T |
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| Q |
101 |
--aagaaattcaaatttcaaaaactaaaagtgacgaaa |
136 |
Q |
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|| ||| ||||| ||| |||||||||||||||||| |
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| T |
26656338 |
aaaacaaactcaaaattc--aaactaaaagtgacgaaa |
26656303 |
T |
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