View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_18 (Length: 222)
Name: NF14581_low_18
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 33399581 - 33399776
Alignment:
| Q |
19 |
gggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtcc |
118 |
Q |
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| T |
33399581 |
gggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtcc |
33399680 |
T |
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| Q |
119 |
attttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaaggttgtcaatgcaattttatcatgtccacttgttaacacaggttctgc |
214 |
Q |
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| T |
33399681 |
attttcgcagtgattggcaacacctgaaatgtaccatcttctcccataggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 33441945 - 33442087
Alignment:
| Q |
67 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
166 |
Q |
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| T |
33441945 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33442044 |
T |
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| Q |
167 |
ggttgtcaatgcaattttatcatgtccacttgttaacacaggt |
209 |
Q |
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| T |
33442045 |
ggttgtaattataattttgtcttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 33452165 - 33452307
Alignment:
| Q |
67 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
166 |
Q |
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| T |
33452165 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33452264 |
T |
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| Q |
167 |
ggttgtcaatgcaattttatcatgtccacttgttaacacaggt |
209 |
Q |
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| T |
33452265 |
ggttgtaattataattttgtcttgcccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 33395701 - 33395880
Alignment:
| Q |
23 |
cggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattt |
122 |
Q |
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| T |
33395701 |
cggcacaggtgagggtgacggggaggctgaaggtgagg---gtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaaga |
33395797 |
T |
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| Q |
123 |
tcgcagtgattggcaacacctgaaatgtaccatcttctcccaaaggttgtcaatgcaattttatcatgtccacttgttaacac |
205 |
Q |
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| T |
33395798 |
ttgcagtgatgagcagcacctgaaatgtaccatcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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