View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_4 (Length: 441)
Name: NF14581_low_4
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 3546285 - 3546667
Alignment:
| Q |
13 |
agggagctactaaagaatatgtttgtctatgtgtaaccaaattgaaattaaaattgcttgttgtgtaaaaaatataattaaagtagctatcaatcgaaaa |
112 |
Q |
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| T |
3546285 |
agggagctactaaagaatatgtttgtctatgtgtaaccaaattgaaattaaaattgcttattgtgtaaaaaatataattaaagtagctatcaatcgaaaa |
3546384 |
T |
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| Q |
113 |
gaattgaaagttatacacgtacatgattgattgttcgtgcgttagttgggtgttagttgacttcatgacttgtagtaaagtctcgtgcacaattaactgg |
212 |
Q |
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| T |
3546385 |
gaattgaaagttatacacgtacatgattgattgttcgtgcgttagttgggtgttagttgacttcatgacttgtagtaaagtctcgtgcacaattaactgg |
3546484 |
T |
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| Q |
213 |
tcaggaaccgaatctagtttagttttcaaatatggaatcttgtagcaaaaacggctacatgtcattgatgatgcaagcaacgtgtgataatattggaaga |
312 |
Q |
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| T |
3546485 |
tcaggaaccgaatctagtttagttttcaaatatggaatcttgtagcaataacggctacatgtcattgatgatgcaagcaacgtgtgataatattggaaga |
3546584 |
T |
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| Q |
313 |
ccaggtcaagtaaaggatgacatggcataattaaagcaagaaaaactaaagaatgaaatggcataattaaagccagatatcac |
395 |
Q |
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| T |
3546585 |
ccaggtcaagtaaaggatgacatggcataattaaagcaagcaaaactaaagaatgacatggcataattaaagccagatatcac |
3546667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 3586285 - 3586319
Alignment:
| Q |
34 |
tttgtctatgtgtaaccaaattgaaattaaaattg |
68 |
Q |
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| T |
3586285 |
tttgtctgtgtgtaaccaaattgaaattaaaattg |
3586319 |
T |
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