View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_6 (Length: 370)
Name: NF14581_low_6
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 17779307 - 17778974
Alignment:
| Q |
18 |
aataatatcactattagtgttagatgtttcaagtggagatgatgatgagaatatcaagtttgtattaagatcttcatgtagtaatggactaataatggat |
117 |
Q |
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| T |
17779307 |
aataatatcactattagtgttagatgtttcaagtggagatgatgatgagaatatcaagcttgtattaagatcttcatgtagtaatggactaataatggat |
17779208 |
T |
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| Q |
118 |
ttataaggggtaacatctacatcaaaattttggctatcattgttgttagtgtagaagtggttggccaaggatgtgttctttgtcaatgagatgttgcttg |
217 |
Q |
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| T |
17779207 |
ttataaggggtaacatcttcatcaaaattttggctatcattgttgttagtgtagaagtggttggccaaggatgtgttctttgtcaatgagatgttgcttg |
17779108 |
T |
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| Q |
218 |
aacaaaattgggtgatttcttgatttttggttagcatattagaggttcttgtttcagatagggaagaaacccaagagtgagacaaagctctttgagccgt |
317 |
Q |
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| T |
17779107 |
aacaaaattgggtgatttcttgatttttggttagcatattagaggttcttgtttcagatagggaagaaacccaagagtgagacaaagctctttgagccgt |
17779008 |
T |
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| Q |
318 |
agaatttgttttcttgaatattctacagatagcc |
351 |
Q |
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| T |
17779007 |
agaatttgttttcttgaatattctacagatagcc |
17778974 |
T |
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