View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_7 (Length: 361)
Name: NF14581_low_7
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 3729551 - 3729879
Alignment:
| Q |
19 |
tgaatgacttcacaactaactttcatcctataattttttaatattggtgttatgctnnnnnnnnn-ttatcctccatgtagtacaccatgtgtcttccct |
117 |
Q |
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| T |
3729551 |
tgaatgacttcacaactaactttcatcctataattttttaatattggtgttatgctaaaaaaaaaattatcctccatgtagtacaccatgtgtcttccct |
3729650 |
T |
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| Q |
118 |
ggtacatgttttcgagggtttaatttggtagaacaaatacatttttcttgtttatgctaaatactttttagtagcctattgcagacttacatcgtctaaa |
217 |
Q |
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| T |
3729651 |
ggcacatgttttcgagggtttaatttggtagaacaaatacatttttcttgtttatgctaaatactttttagtagcctattgcagacttacatcgtctaaa |
3729750 |
T |
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| Q |
218 |
ccggaaaaaacatgaacgatgaagcttcatcattattcatttaccaaaata--agaggttatattatttatacaaactataaaaagaaaaagatatcata |
315 |
Q |
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| T |
3729751 |
ccggaaaaaacatgaacgatgaagcttcattattattcatttgccaaaataagagaggttatattatttatacaaactataaaaagaaaacgatatcata |
3729850 |
T |
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| Q |
316 |
catgtatgaattcaattaacttaattcat |
344 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3729851 |
catgtatgaattcaattaacttaattcat |
3729879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 34821494 - 34821568
Alignment:
| Q |
194 |
tattgcagacttacatcgtctaaaccggaaaaaacatgaacgatgaagcttcatcattattcatttaccaaaata |
268 |
Q |
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||||||||||||| || ||||| || ||||| ||||| ||||||||| |||| || || ||| |||||||||||| |
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| T |
34821494 |
tattgcagacttatattgtctacactggaaacaacatcaacgatgaaacttcttcgttgttcctttaccaaaata |
34821568 |
T |
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