View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14581_low_8 (Length: 331)

Name: NF14581_low_8
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14581_low_8
NF14581_low_8
[»] chr4 (14 HSPs)
chr4 (83-312)||(24771086-24771324)
chr4 (12-87)||(24771478-24771553)
chr4 (13-81)||(24773400-24773468)
chr4 (242-288)||(16651127-16651173)
chr4 (30-82)||(12413364-12413416)
chr4 (14-81)||(24839685-24839752)
chr4 (14-81)||(24843143-24843210)
chr4 (27-81)||(24957025-24957079)
chr4 (111-159)||(24839508-24839556)
chr4 (111-159)||(24842966-24843014)
chr4 (85-159)||(16651256-16651330)
chr4 (28-78)||(16651440-16651490)
chr4 (23-76)||(24759371-24759424)
chr4 (111-151)||(24759188-24759228)
[»] scaffold1886 (2 HSPs)
scaffold1886 (111-159)||(465-513)
scaffold1886 (14-81)||(650-717)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 83 - 312
Target Start/End: Complemental strand, 24771324 - 24771086
Alignment:
Q  83 tacgatcaaagaaattgaaaagtcaaagaattacatgaaagtttaggacaaattataagactaacaatattataatg-----nnnnnnnnnnnnnnnnng 177  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||                      |    
T  24771324 tacgatcaaagaaattgaaaagtcaaagaattacatgaaaatttaggacaaattataagactaacaatattataatgagaaaataaaataaaataaaaag 24771225  T
Q  178 gcttagctgaa----gaaataattttttacctggatttctgggaaggctcacacaataaccatgaatacacttcaaaagatgttcaaaaggaccaggata 273  Q
    |||||||||||    ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24771224 gcttagctgaatgaagaaataattttttacctggatttctaggaaagcacacacaataaccatgaatacacttcaaaagatgttcaaaaggaccaggata 24771125  T
Q  274 ttttttctgacaatcaacgtcggtgtcacatgcttctga 312  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24771124 ttttttctgacaatcaacgtcggtgtcacatgcttctga 24771086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 24771553 - 24771478
Alignment:
Q  12 gagatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtcttttacga 87  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  24771553 gagatgaatgatggtatatttgtgtgtttaatttacttccatctcattattttgatgtttttagagtcttttacga 24771478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 24773468 - 24773400
Alignment:
Q  13 agatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    ||||||||  |||| ||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||    
T  24773468 agatgaatagtggtttatttgtgtgttttacttacttccgtcttattattatgatgtttctagagtctt 24773400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 16651173 - 16651127
Alignment:
Q  242 cacttcaaaagatgttcaaaaggaccaggatattttttctgacaatc 288  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  16651173 cacttcaaaagatgttcataaggaccgggatattttttctgacaatc 16651127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 12413364 - 12413416
Alignment:
Q  30 tttgtgtgtttaacttacttccatctcattattttgatgtttctagagtcttt 82  Q
    ||||||||||  ||||| ||||||| |||||||||||||||||||||||||||    
T  12413364 tttgtgtgttgtacttatttccatcccattattttgatgtttctagagtcttt 12413416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 24839752 - 24839685
Alignment:
Q  14 gatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||| | |||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||    
T  24839752 gatgaacggtggtttatttgtgtgttttacttacttctatcccattattctgatgtttctagactctt 24839685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 24843210 - 24843143
Alignment:
Q  14 gatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||| | |||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||    
T  24843210 gatgaacggtggtttatttgtgtgttttacttacttctatcccattattctgatgtttctagactctt 24843143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 24957079 - 24957025
Alignment:
Q  27 atatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||||||| ||| ||||||||| |||||||||||  |||||||||||||||||    
T  24957079 atatttgtgtattttacttacttcaatctcattattacgatgtttctagagtctt 24957025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 24839556 - 24839508
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  24839556 aattacatgaaagtttgggacgaattataagagtaacaatattacaatg 24839508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 24843014 - 24842966
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  24843014 aattacatgaaagtttgggacgaattataagagtaacaatattacaatg 24842966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 16651330 - 16651256
Alignment:
Q  85 cgatcaaagaaattgaaaagtcaaagaattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    ||||||||||||||| || |||| | ||||| || ||| ||| ||||||||||||| |  |||||||||||||||    
T  16651330 cgatcaaagaaattgcaaggtcagataattaaataaaattttgggacaaattataataggaacaatattataatg 16651256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 16651490 - 16651440
Alignment:
Q  28 tatttgtgtgtttaacttacttccatctcattattttgatgtttctagagt 78  Q
    ||||||||||||| ||||||||||||| ||||||| |||| ||| ||||||    
T  16651490 tatttgtgtgttttacttacttccatcccattattatgatatttatagagt 16651440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 24759424 - 24759371
Alignment:
Q  23 tggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctaga 76  Q
    |||| |||||| |||||| |||||||||||||| |||||| |||||||| ||||    
T  24759424 tggtttatttgcgtgtttcacttacttccatcttattattatgatgtttataga 24759371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 24759228 - 24759188
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaata 151  Q
    |||||||||||||||| |||||||| |||||| ||||||||    
T  24759228 aattacatgaaagtttgggacaaataataagagtaacaata 24759188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1886 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold1886
Description:

Target: scaffold1886; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 513 - 465
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  513 aattacatgaaagtttgggacaaattataagagtaacaatattacaatg 465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1886; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 717 - 650
Alignment:
Q  14 gatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||| | |||| ||||||||||||| ||||||||| ||| ||||||| |||| |||||||| ||||    
T  717 gatgaacggtggtttatttgtgtgttttacttacttctatcccattattctgatatttctagactctt 650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University