View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14581_low_9 (Length: 316)
Name: NF14581_low_9
Description: NF14581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14581_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 2048586 - 2048854
Alignment:
| Q |
23 |
ttacatgcaaagatcactggcaccgtatcattacgttcctaattttatgaatatttacatgtagttatgtctagctatcttttt-attttatttagatta |
121 |
Q |
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| T |
2048586 |
ttacatgcaaagatcactagcgtcatatcattatgttcctaattttatgaatatttacatgtagttatgtctagccatcttttttattttatttagattg |
2048685 |
T |
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| Q |
122 |
caactctcc---ctctttttattgagtatttgctttgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaat |
218 |
Q |
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| T |
2048686 |
catctctcctccctctttttattgggtatttgctttgtggaaaactcaaataaacaaaagttggaggttggaaaaacttacagtggttcgactcttgaat |
2048785 |
T |
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| Q |
219 |
tgacactcggcatcctatctatgttgttcatgatcacgcgcacaaattgcattaggctcctaattatatgaatatttt |
296 |
Q |
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| T |
2048786 |
cgacactcggcatcctatctatgttgttcatgatcac---------ttgcattaggctcctaattatatgaatatttt |
2048854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 295
Target Start/End: Original strand, 2054796 - 2054937
Alignment:
| Q |
154 |
tgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcggcatcctatctatgttgttcatgatc |
253 |
Q |
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| T |
2054796 |
tgtggaaaactcaaataaatcgaagttcgaggttgaaaacatttacggtggttcaactcttgaaatggcgctcggcatcctagctacattgttcatgctc |
2054895 |
T |
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| Q |
254 |
acgcgcacaaattgcattaggctcctaattatatgaatattt |
295 |
Q |
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| T |
2054896 |
acttgtaccagttgcattaggctcttaattatatgaacattt |
2054937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 2054734 - 2054793
Alignment:
| Q |
23 |
ttacatgcaaagatcactggcaccgtatcattacgttcctaattttatgaatatttacat |
82 |
Q |
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| T |
2054734 |
ttacatgcaaagatcacttgcaccatatcatcatgttcttatttatatgaatatttacat |
2054793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 2083390 - 2083460
Alignment:
| Q |
225 |
tcggcatcctatctatgttgttcatgatcacgcgcacaaattgcattaggctcctaattatatgaatattt |
295 |
Q |
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| T |
2083390 |
tcggcaccctagctttattgttcaagatcactcgcaccaataacattagactcctaattatatgaatattt |
2083460 |
T |
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