View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14582_low_1 (Length: 631)

Name: NF14582_low_1
Description: NF14582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14582_low_1
NF14582_low_1
[»] chr2 (6 HSPs)
chr2 (18-510)||(24563646-24564138)
chr2 (518-616)||(24564203-24564301)
chr2 (531-616)||(26022099-26022185)
chr2 (531-616)||(27942208-27942294)
chr2 (518-596)||(19520660-19520738)
chr2 (555-618)||(32690745-32690809)
[»] chr1 (2 HSPs)
chr1 (517-616)||(45836247-45836347)
chr1 (541-598)||(41502394-41502451)
[»] chr3 (3 HSPs)
chr3 (531-599)||(37268690-37268758)
chr3 (541-598)||(13297831-13297888)
chr3 (531-599)||(32649100-32649168)
[»] chr5 (2 HSPs)
chr5 (531-598)||(34305011-34305078)
chr5 (534-616)||(20428253-20428335)
[»] chr7 (2 HSPs)
chr7 (531-616)||(2791887-2791973)
chr7 (526-598)||(28287377-28287449)
[»] chr6 (1 HSPs)
chr6 (531-618)||(21104299-21104387)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 24563646 - 24564138
Alignment:
Q  18 atcaagtacatgtggtacagcatggagactcggtgatgctaaaccatcagcagttcccaaatgaatttggatcgttggattgggaaggtggtgctaacac 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24563646 atcaagtacatgtggtacagcatggagactcggtgatgctcaaccatcagcagttctcaaatgaatttggatcgttggattgggaaggtggtgctaacac 24563745  T
Q  118 cgttgatcagtcttactggacacactctcattggtctgattatgtcaatcattcatcctttctttatcatcttccctgaaaaacgaataagcctcaacaa 217  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  24563746 cgttgatcagtcttactggacacagtctcattggtctgatcatgtgattcattcatcctctctttttcatcttccatgaaaaatgaataagcctcaacaa 24563845  T
Q  218 atttctacacttannnnnnnnnnnnnnnnnctagcagttaatgttttgtttctagttggaatcaagacaaaacaaatgttttattttaacagaatgtgaa 317  Q
    |||||||||||||                 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24563846 atttctacacttatttttattttttgttttctaccagttattgttttgtttctagttggaatcaagacaaaacaaatgttttattttaacagaatgtgaa 24563945  T
Q  318 agaaagcgtgaaagcatgtataatttattaatacaagatatagtattccataaaaatacaagtaatgtaattttgtttatttgtgtgttgattgtgattg 417  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  24563946 agacagcatgaaagcatgtataatttattaatacaagatatagtattccataaaaatacaagtaatgtaattttgtttgtttgtttgttgattgtgattg 24564045  T
Q  418 atcttaagattgaggttgcttgtgcaataaacgtatcaatgttgctttctttaagattctcttataattatttctacgcattttattattatt 510  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24564046 atcttaaggttgaggttgtttgtgcaataaatgtatcaatgttgctttctttaagattcttttataattatttctacgcattttattattatt 24564138  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 518 - 616
Target Start/End: Original strand, 24564203 - 24564301
Alignment:
Q  518 gagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgaccgtggctgcaccctttg 616  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  24564203 gagtataccagacaaggttaaactgttatctttttagtggctaaaagtaagtatgttgacttttgtttttagttatcatgaccgtggctacaccctttg 24564301  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 26022185 - 26022099
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga-ccgtggctgcaccctttg 616  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  ||||||||||||||||||||||||   ||||||||||||||||    
T  26022185 aaggttaaactgctatctttacaatggctaaaagcaaatatgcaaacttttgtttttagttatcatgattggtggctgcaccctttg 26022099  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 27942294 - 27942208
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccctttg 616  Q
    |||||||||||| |||||||  | |||||||||||||||||| |||||||| ||||||||||| |||||  ||| ||||||||||||    
T  27942294 aaggttaaactgatatctttccaatggctaaaaacaaatatgctaacttttatttttagttattatgactggtgactgcaccctttg 27942208  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 596
Target Start/End: Complemental strand, 19520738 - 19520660
Alignment:
Q  518 gagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcat 596  Q
    ||||||| |||| ||||||||| ||||||||||| ||||| ||||| |||||||||| | ||| |||||||| ||||||    
T  19520738 gagtatagcagagaaggttaaattgttatcttttcagtggttaaaagcaaatatgtttagtttagtttttagctatcat 19520660  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 618
Target Start/End: Original strand, 32690745 - 32690809
Alignment:
Q  555 tggctaaaaacaaatatgttaacttttgtttttagttatcatgacc-gtggctgcaccctttgct 618  Q
    ||||||||| ||||| ||  ||| |||||||||||||||||||||| ||||||||||| ||||||    
T  32690745 tggctaaaagcaaatttgcaaacctttgtttttagttatcatgaccagtggctgcaccatttgct 32690809  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 517 - 616
Target Start/End: Complemental strand, 45836347 - 45836247
Alignment:
Q  517 agagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgaccg-tggctgcacccttt 615  Q
    |||||||| |||| ||||||||||||||||||||  ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  45836347 agagtatagcagaaaaggttaaactgttatctttccagtggctgaaagcaaatttgttaacttttgtttttagttatcatgaccgatggctgcacccttt 45836248  T
Q  616 g 616  Q
    |    
T  45836247 g 45836247  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 598
Target Start/End: Complemental strand, 41502451 - 41502394
Alignment:
Q  541 tgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 598  Q
    ||||||| ||| ||||||||||  |||||||| | |||||||||||||| ||||||||    
T  41502451 tgttatcatttcagtggctaaaggcaaatatgcttacttttgtttttagctatcatga 41502394  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 531 - 599
Target Start/End: Original strand, 37268690 - 37268758
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 599  Q
    ||||||||||||||||||||  ||||| ||||  |||||||||| |||||||||||||| |||||||||    
T  37268690 aaggttaaactgttatctttccagtggttaaaggcaaatatgtttacttttgtttttagctatcatgac 37268758  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 598
Target Start/End: Complemental strand, 13297888 - 13297831
Alignment:
Q  541 tgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 598  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  13297888 tgttatcgttttagtggctaaagacaaatatgcttacttttgtttttagctatcatga 13297831  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 599
Target Start/End: Original strand, 32649100 - 32649168
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 599  Q
    |||||||||||||||||||| || ||| ||||  |||||| ||| || ||| ||||||| |||||||||    
T  32649100 aaggttaaactgttatctttctattggttaaacgcaaatacgttcacgtttatttttagctatcatgac 32649168  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 598
Target Start/End: Complemental strand, 34305078 - 34305011
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 598  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  |||||| |||||||||||||||||    
T  34305078 aaggttaaactgctatctttccaatggctaaaagcaaatatgcaaactttcgtttttagttatcatga 34305011  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 616
Target Start/End: Original strand, 20428253 - 20428335
Alignment:
Q  534 gttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccctttg 616  Q
    ||||||||| |||||||  | ||||||||| ||||||||  | ||||| |||||||||||||||||  ||||||||||||||||    
T  20428253 gttaaactgctatctttccaatggctaaaagcaaatatgcaatctttt-tttttagttatcatgactggtggctgcaccctttg 20428335  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 2791887 - 2791973
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga-ccgtggctgcaccctttg 616  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  || |||||||||| ||||||||||   ||||||||||||||||    
T  2791887 aaggttaaactgctatctttccaatggctaaaagcaaatatgcaaatttttgtttttggttatcatgattggtggctgcaccctttg 2791973  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 598
Target Start/End: Original strand, 28287377 - 28287449
Alignment:
Q  526 cagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 598  Q
    |||| ||||||||| ||||||||||| | ||||||||| |||||||| | || ||| ||||||| ||||||||    
T  28287377 cagagaaggttaaattgttatcttttcattggctaaaagcaaatatggttacctttatttttagctatcatga 28287449  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 618
Target Start/End: Complemental strand, 21104387 - 21104299
Alignment:
Q  531 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccctttgct 618  Q
    ||||||||| || |||||||  | ||||||||| |||||| |  ||| |||||||||||||||||||||  ||||||||||| ||||||    
T  21104387 aaggttaaaatgctatctttccaatggctaaaagcaaataagcaaacctttgtttttagttatcatgactggtggctgcaccatttgct 21104299  T

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