View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14582_low_3 (Length: 343)
Name: NF14582_low_3
Description: NF14582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14582_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 45512538 - 45512855
Alignment:
| Q |
18 |
caaaccctacctaatttttaagatcaaggaacattgtgtaactatgctagatcctatctaatatcatcaattccattactttgatattattttcttaatt |
117 |
Q |
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| T |
45512538 |
caaaccctacctaatttttaagatcaaggaacattgtgtgactatgctagatcctatctaat--catcaattccattactttgatattattttcttaatt |
45512635 |
T |
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| Q |
118 |
taaatcatctttcattgggttaattaaatcaaaatttgaatgttggtagaaatcaatatagcaacataattggtgaaagcatacaaacaagatccatggg |
217 |
Q |
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| T |
45512636 |
taaatcatctttcattgggttaattaaatcaaaatttgaatgttggtagaaatcaatatagcaacataattggtgaaagcatacaaacaagatccatggg |
45512735 |
T |
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| Q |
218 |
aatgaagagagcatcgacatgtgacggagaaaagcttaaaccgagggcaaaaatgaattaggaaggtgacgagaccagtgattagaagacaaggatttaa |
317 |
Q |
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| T |
45512736 |
aatgaagagagcaacgacatgtgacggataaaagcttaaaccgagggcaaaaatgaattaggaaggtgacgagaccagtgattagaagacaaggatttaa |
45512835 |
T |
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| Q |
318 |
aaattaggaatacacctatg |
337 |
Q |
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| T |
45512836 |
aaattaggaatacacctatg |
45512855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 29264921 - 29264799
Alignment:
| Q |
86 |
aattccattactttgata-ttattttcttaatttaaatcatctttcattgggttaattaaatcaaaatttgaatgttggtagaaatcaatatagcaacat |
184 |
Q |
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| T |
29264921 |
aattccatttctttgatgcttattttcttaattgaaattatctttcattaggttaatcaaatcaaaa-ttaactttcgttagaaatcaatttagcagcat |
29264823 |
T |
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| Q |
185 |
aattggtgaaagcatacaaacaaga |
209 |
Q |
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| T |
29264822 |
aa-tggtaaaagcatacaaacaaga |
29264799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 29108537 - 29108585
Alignment:
| Q |
104 |
ttattttcttaatttaaatcatctttcattgggttaattaaatcaaaat |
152 |
Q |
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| T |
29108537 |
ttattttcttaattgaaattatctttcattaggttaatcaaatcaaaat |
29108585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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