View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14582_low_5 (Length: 260)
Name: NF14582_low_5
Description: NF14582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14582_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 5111304 - 5111099
Alignment:
| Q |
30 |
aagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaac |
129 |
Q |
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| T |
5111304 |
aagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgtcactcaaatccaaccatttcaatctcttcaac |
5111205 |
T |
|
| Q |
130 |
tgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtacctt |
229 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111204 |
tgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtacctt |
5111105 |
T |
|
| Q |
230 |
caaggt |
235 |
Q |
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|||||| |
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| T |
5111104 |
caaggt |
5111099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 5094316 - 5094097
Alignment:
| Q |
15 |
aatattattatggccaagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccat |
114 |
Q |
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||||||||||| || || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||| || |
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| T |
5094316 |
aatattattatagctaatatccaattgttgaagttttgataactcccctatccttgaaggaatttctccaacaaaatcattgttgcttaaattcaacaat |
5094217 |
T |
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| Q |
115 |
ttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgag |
214 |
Q |
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| T |
5094216 |
ttcaatcttttcaactgaagcaactcatgtggtaactcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgag |
5094117 |
T |
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| Q |
215 |
gagaaattgtaccttcaagg |
234 |
Q |
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|||||||||||||||||||| |
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| T |
5094116 |
gagaaattgtaccttcaagg |
5094097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 5083770 - 5083972
Alignment:
| Q |
33 |
atccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactga |
132 |
Q |
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|||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
5083770 |
atccaattgttgaagttttgataagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactga |
5083869 |
T |
|
| Q |
133 |
agtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaa |
232 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
5083870 |
agtaactcatgtggtaactcaccatggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaa |
5083969 |
T |
|
| Q |
233 |
ggt |
235 |
Q |
| |
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||| |
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| T |
5083970 |
ggt |
5083972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 14427589 - 14427753
Alignment:
| Q |
73 |
ggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatggaaactattgc |
169 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc |
14427688 |
T |
|
| Q |
170 |
gatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaagg |
234 |
Q |
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|||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
14427689 |
catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaagg |
14427753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
| Q |
72 |
aggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcga |
171 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || || | |||| ||||| || ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct |
16873420 |
T |
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| Q |
172 |
tgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaa |
232 |
Q |
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||||| ||||||| | |||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
16873419 |
tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
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