View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14583_low_2 (Length: 342)
Name: NF14583_low_2
Description: NF14583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14583_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 52 - 322
Target Start/End: Original strand, 8975742 - 8976006
Alignment:
| Q |
52 |
gttaaggttgtttttgcatgcttcaactccagaaacacactcctcttctaaaagcatgtatggataaaataacaaataatataagacaaacaaatatttc |
151 |
Q |
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| T |
8975742 |
gttaaggttgtttttgcatgcttcaactccagaaacacactcctcctctaaaagcatgtatggataaaataacaaataatacaagacaaacaaatatttc |
8975841 |
T |
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| Q |
152 |
aattaaacgtgatannnnnnnnnnnnnnagttctgcatgttttgctaaatcacgataaaaaatgacaaataataatatgtgatttagttaaataggacct |
251 |
Q |
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| T |
8975842 |
aattaaacgtgatatttttttt------agttctgcatcttttgctaaatcacgataaaaaatgacaaataataatatgggatttagttaaataggacct |
8975935 |
T |
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| Q |
252 |
taactgtcttcgtgagtttaatttaattggtaggaagatgtcataatatatgtaaggatcggtgtttgaat |
322 |
Q |
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| T |
8975936 |
taattgtcttcgtgagtttaatttagttggtaggaacatgtcataatatatgtaagggtcggtgtttgaat |
8976006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 8970845 - 8970877
Alignment:
| Q |
126 |
aataatataagacaaacaaatatttcaattaaa |
158 |
Q |
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| T |
8970845 |
aataatataagacaaacaaatatttcaaataaa |
8970877 |
T |
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