View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14583_low_4 (Length: 285)
Name: NF14583_low_4
Description: NF14583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14583_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 24188093 - 24188243
Alignment:
| Q |
13 |
cagagggaagacaagcaaaagcgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacg |
112 |
Q |
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| T |
24188093 |
cagaaggaagacaagcaaaagcgagaatgtgccgccagagttaaatgctttgcataaaattctcaaacagtacaaggtaatcatgcccattaaggaaacg |
24188192 |
T |
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| Q |
113 |
atcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaa |
163 |
Q |
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| T |
24188193 |
atcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaa |
24188243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 266
Target Start/End: Original strand, 24318234 - 24318456
Alignment:
| Q |
44 |
ccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttc |
143 |
Q |
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| T |
24318234 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaagcccatgctgcatcatgtttc |
24318333 |
T |
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| Q |
144 |
ttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatcttacgcatgaggtaccagttgaagtcag |
243 |
Q |
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| T |
24318334 |
ttcaagaactcttgaaaaaacatgtcgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatacgtatgaggtattggctgaagtcag |
24318433 |
T |
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| Q |
244 |
gtttgatggtgacggatgcttta |
266 |
Q |
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| T |
24318434 |
gtttgatggtgaaggatgcttta |
24318456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 17430579 - 17430463
Alignment:
| Q |
89 |
gtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaac |
188 |
Q |
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| T |
17430579 |
gtaatcatgccgatcaaggaaatggccgatcaaagtccatgctgcatcaagtttcttcaagaactattgaagattaatgccgatctatccgaggaagaac |
17430480 |
T |
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| Q |
189 |
tcatattactgactagc |
205 |
Q |
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| T |
17430479 |
tcatatcactaactagc |
17430463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 3398954 - 3399113
Alignment:
| Q |
107 |
gaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcg |
206 |
Q |
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| T |
3398954 |
gaaacggtcgaacagattccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctagcg |
3399053 |
T |
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| Q |
207 |
agtgtcatcttacgcatgaggtaccagttgaagtcaggtttgatggtgacggatgcttta |
266 |
Q |
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| T |
3399054 |
aatttcatcacacgtacgaggtaccggctgtagtcaggtttgatggtgaaggttgcttta |
3399113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 24537233 - 24537175
Alignment:
| Q |
34 |
cgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaa |
92 |
Q |
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|||||| ||||||||| |||| |||| |||||||||||||||||| |||||||| |||| |
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| T |
24537233 |
cgagaacgtgccgccagagttcaatgttttgcatcaaattctcaagcagtacaaagtaa |
24537175 |
T |
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