View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_high_16 (Length: 218)
Name: NF14584_high_16
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 38485707 - 38485498
Alignment:
| Q |
1 |
atcccatcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaactt |
100 |
Q |
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| T |
38485707 |
atcccatcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaactt |
38485608 |
T |
|
| Q |
101 |
gaggagcatggggcatcttcataaaaagtgagttactgaagaatgcaattcgccgtctagcttctagattaattggaatgttttgcattgaatccctgga |
200 |
Q |
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| T |
38485607 |
gaggagcatggggcatcttcataaaaagtgagttactgaagaatgcaattctccgtctagcttctagattaattggaatgttttgcattgaatccctgga |
38485508 |
T |
|
| Q |
201 |
ggtaagaata |
210 |
Q |
| |
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|||||||||| |
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| T |
38485507 |
ggtaagaata |
38485498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 3684861 - 3684748
Alignment:
| Q |
57 |
ataataaggggttagaacactgaaagccatcattttctcaacttgaggagcatggggcatcttcataaaaagtgagttactgaagaatgcaattcgccgt |
156 |
Q |
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| T |
3684861 |
ataatacggggtcaaaacactgaaagccatcattttttcaacatagggagcacggggaatgttcataaacaaagaattgctaaagaaagcaatccgccgt |
3684762 |
T |
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| Q |
157 |
ctagcttctagatt |
170 |
Q |
| |
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| ||| || ||||| |
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| T |
3684761 |
cgagcctcaagatt |
3684748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 30120091 - 30119889
Alignment:
| Q |
7 |
tcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaacttgaggag |
106 |
Q |
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||||||||| |||| |||||||| ||||| ||||| | ||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
30120091 |
tcttcattctcagtcctgagctgttctttgctgtataatacttcttcattgtaataaggtgttagaacactgaaagccagcattttctcaacttggggag |
30119992 |
T |
|
| Q |
107 |
catggggcatcttcataaaaagtgagttactgaagaatgcaattcgccgtctagcttctagattaattggaatgttttgcattgaatccctggaggtaag |
206 |
Q |
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|||||||||| ||||||||||||||||| |||||||| ||||| | |||||| || |||||||| || |||||||||||||||||||||||||||||||| |
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| T |
30119991 |
catggggcatattcataaaaagtgagttgctgaagaaagcaatcctccgtctggcctctagatttataggaatgttttgcattgaatccctggaggtaag |
30119892 |
T |
|
| Q |
207 |
aat |
209 |
Q |
| |
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||| |
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|
| T |
30119891 |
aat |
30119889 |
T |
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