View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_high_6 (Length: 308)
Name: NF14584_high_6
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 33371998 - 33372267
Alignment:
| Q |
18 |
gtttagactttgcttttgcatgagaaagaagcttaggatactcactaactttggttgtgaactgaacatcataagcttctattcctgggttggactgttc |
117 |
Q |
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| T |
33371998 |
gtttagactttgcttttgcatgagaaagaagcttaggatactcactaactttggttgtgaactgaacatcataagcttctattcctgggttggactgttc |
33372097 |
T |
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| Q |
118 |
aaattttgagatcatgtattcgttttcgtcgatgaaaacagtgcggccattttggtttagtgcagaccagagaagtgactcatgggtgagaccaaagatg |
217 |
Q |
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| T |
33372098 |
aaattttgagatcatgtattcgttttcgtcgatgaaaacagtgcggccattttggtttagtgcagaccagagaagtgactcatgggtgagaccaaagatg |
33372197 |
T |
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| Q |
218 |
aggaagttggggtgtggtgtaaggtgaagagtggttgttatagcgttgatttcttcaaaggacatggatt |
287 |
Q |
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| T |
33372198 |
aggaagttggggtgtggtgtaaggtgaagagtggttgttatagcgttgatttcttcaaaggacatggatt |
33372267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 33367809 - 33368066
Alignment:
| Q |
30 |
cttttgcatgagaaagaagcttaggatactcactaactttggttgtgaactgaacatcataagcttctattcctgggttggactgttcaaattttgagat |
129 |
Q |
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| T |
33367809 |
cttttgcatgagaaagcaactttggatactcactaactttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagat |
33367908 |
T |
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| Q |
130 |
catgtattcgttttcgtcgatgaaaacagtgcggccattttggtttagtgcagaccagagaagtgactcatgggtgagaccaaagatgaggaagttgggg |
229 |
Q |
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| T |
33367909 |
aatatattcgttttcatcgatgaaaacagtgcgaccattgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttgggg |
33368008 |
T |
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| Q |
230 |
tgtggtgtaaggtgaagagtggttgttatagcgttgatttcttcaaaggacatggatt |
287 |
Q |
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| T |
33368009 |
tttggtgtaaggtgaagagtggttgttatggcgttgatttctgaaaaggacatggatt |
33368066 |
T |
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