View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_low_1 (Length: 686)
Name: NF14584_low_1
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Complemental strand, 37417098 - 37416443
Alignment:
| Q |
18 |
cttttgatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgacaatttctgttggaaataatgctgtcaagtcatttga |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417098 |
cttttgatgaaaacggcaacttagttttttcttatatttttactattggaaaaactgtgatgacaatttctgttggaaataatgctgtcaagtcatttga |
37416999 |
T |
|
| Q |
118 |
ggtgtttggaacacctctggattgtgtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgca |
217 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416998 |
ggtgtttggaacacttgtggattgtgtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgca |
37416899 |
T |
|
| Q |
218 |
agtcttgtctgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattg |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416898 |
agtcttgtatgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattg |
37416799 |
T |
|
| Q |
318 |
tactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416798 |
tactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattag |
37416699 |
T |
|
| Q |
418 |
ctgactcatgacatgctagaacacttgggaacattggaatatctgtaaatgctcgttactcttgcacattcatgtcagaagatgcttttagcattcttaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37416698 |
ctgactcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaa |
37416599 |
T |
|
| Q |
518 |
agaac-ggaaaaaatactagtttctatgacgacacggtagctgcatcattaacagaaagatatgagtggatgagacagtcccctttgaggaaacaaataa |
616 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37416598 |
agaactgaaaaaaatactagtttctatgacgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctctgaggaaacaaataa |
37416499 |
T |
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| Q |
617 |
tacacagctcttgcaaacttgattttttgtttgactattatttttcccaccctatg |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37416498 |
tacacagctcttgcaaacttgattttttgtttgactattacttttcccaccctatg |
37416443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Complemental strand, 37424630 - 37423975
Alignment:
| Q |
18 |
cttttgatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgacaatttctgttggaaataatgctgtcaagtcatttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37424630 |
cttttgatgaaaacggcaacttagttttttcatatatttttactattggaaaaactgtgatgacaaattctgttggaaataatgctgtcaagtcatttga |
37424531 |
T |
|
| Q |
118 |
ggtgtttggaacacctctggattgtgtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgca |
217 |
Q |
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|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424530 |
ggtgtttggaacacttgtggattgtgtcattagcattatgtaagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgca |
37424431 |
T |
|
| Q |
218 |
agtcttgtctgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattg |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424430 |
agtcttgtatgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattg |
37424331 |
T |
|
| Q |
318 |
tactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424330 |
tactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattag |
37424231 |
T |
|
| Q |
418 |
ctgactcatgacatgctagaacacttgggaacattggaatatctgtaaatgctcgttactcttgcacattcatgtcagaagatgcttttagcattcttaa |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37424230 |
ctgactcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaa |
37424131 |
T |
|
| Q |
518 |
agaac-ggaaaaaatactagtttctatgacgacacggtagctgcatcattaacagaaagatatgagtggatgagacagtcccctttgaggaaacaaataa |
616 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37424130 |
agaactgaaaaaaatactagtttctatgacgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctatgaggaaacaaataa |
37424031 |
T |
|
| Q |
617 |
tacacagctcttgcaaacttgattttttgtttgactattatttttcccaccctatg |
672 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37424030 |
tacacagctcttgcaaacttgattttttgtttgactattacttttcccaccctatg |
37423975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 38448751 - 38448837
Alignment:
| Q |
472 |
gttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaacggaaaaaatactagtttctatgacgacacggtagct |
558 |
Q |
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||||||||| | ||||||||| || | ||||||||| ||||| |||||| | ||| |||||| |||||||||||||||| ||||||| |
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| T |
38448751 |
gttactcttactcattcatgtaagcatatgcttttatcattcctaaagagcagaagaaatacgagtttctatgacgacatggtagct |
38448837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 8573811 - 8573759
Alignment:
| Q |
143 |
gtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaata |
195 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||||| |||||||||||| |
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|
| T |
8573811 |
gtcattagcattacatgagcccttgttgaccaacaaaattgcattctctaata |
8573759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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