View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_low_10 (Length: 306)
Name: NF14584_low_10
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 16284736 - 16285014
Alignment:
| Q |
11 |
atataaatcattgtgtattgtgttcgttaggtaagagaataatatannnnnnnnnggtaatagagaataaatatttgagtcaaagtgtaaaattaaagat |
110 |
Q |
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| T |
16284736 |
atataaatcattgtgtattgtgttggttaggtaagagaataatatatttttttt-ggtaatagagaataaatatttgagtcaaagtgtaaaattaaagat |
16284834 |
T |
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| Q |
111 |
tcaagtgtgcaaaactgaaaaaagtataggataatataannnnnnngggggtgtagaaatgcataccctcacctcaacaatcaacatagatccatcctgt |
210 |
Q |
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| T |
16284835 |
tcaagtgtgcaaaactgaaaaaagtataggataatataatttttttgggggtgtagaaatgcataccctcacctcaacaatcaacatagatccatcctgt |
16284934 |
T |
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| Q |
211 |
catcctgtatagtgtatacgggcacatgtcaccctgtatagttttaaacgattttttatggtaaaatatgctggagaatt |
290 |
Q |
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| T |
16284935 |
catcccgtatagtgtatactggcacatgtcaccctgtatagttttaaacgattttttatggtaaaatatgctggagaatt |
16285014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17265141 - 17264939
Alignment:
| Q |
11 |
atataaatcattgtgtattgtgttcgttaggtaagagaataatatannnnnnnnn---ggtaatagagaataaatatttgagtcaaagtgtaaaattaaa |
107 |
Q |
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| T |
17265141 |
atataaatcattgtgtattgtgttggttaggtaagagaataatatttttattttttttggtaatagagaataaatatttgagtcaaagtgtaaaattaaa |
17265042 |
T |
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| Q |
108 |
gattcaagtgtgcaaaactgaaaaaagtataggataatataannnnnnngggggtgtagaaatgcataccctcacctcaacaatcaacatagatccatcc |
207 |
Q |
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| T |
17265041 |
gattcaggtgtgcaaaactgaaaaaagtataggataatataattttttggggggtgtagaaatgcataccctcacctcaacaatcaacatagatccatcc |
17264942 |
T |
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| Q |
208 |
tgt |
210 |
Q |
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||| |
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| T |
17264941 |
tgt |
17264939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 17264869 - 17264830
Alignment:
| Q |
250 |
agttttaaacgattttttatggtaaaatatgctggagaatt |
290 |
Q |
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| T |
17264869 |
agttttaaacgattttttatggt-aaatatgcttgagaatt |
17264830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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