View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_low_11 (Length: 282)
Name: NF14584_low_11
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 22377241 - 22377031
Alignment:
| Q |
17 |
caaatatcctcttatgaaattattggattacaatctaattaaacccaccgcaattaaaaaattataaaggggaatgggaaatggggaattgtgtggaaaa |
116 |
Q |
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| T |
22377241 |
caaatatcctcttacgaaattattggattacaatctaattaaacccaccgcaattaaaaaattataaagttgaatgggaaatggggaattgtgtggaaaa |
22377142 |
T |
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| Q |
117 |
agagagtagataggctatgatggtacgcaagacactaacagaaccgcgcgaaagaatattatacagtgtagcacctgcgagtagataggcatttaacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
22377141 |
agagagtagataggctatgatggtacgcaagacactaacagaaccgcgcgaaagaatattatacagtgtaacaccttcgagtagagaggcatttaacatg |
22377042 |
T |
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| Q |
217 |
aaaagaaaaag |
227 |
Q |
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||||||||||| |
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| T |
22377041 |
aaaagaaaaag |
22377031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 9368604 - 9368743
Alignment:
| Q |
17 |
caaatatcctcttatgaaattattggattacaatctaattaaacccaccgcaattaaaaaattataaaggggaatgggaaatggggaattgtgtggaaaa |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
9368604 |
caaatatcctcttatgaaattattgaattacaatctaattaaacccactgtaattaaaaaattataaaggggaatgggaaatggcgaactgtgtggaaaa |
9368703 |
T |
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| Q |
117 |
agagagtagataggctatgatggtacgcaagacactaaca |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
9368704 |
agagagtagataggctatgatggtacgcaagacactaaca |
9368743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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