View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_low_13 (Length: 265)
Name: NF14584_low_13
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 33423776 - 33423527
Alignment:
| Q |
1 |
attggggttgaagcgagagcaatatacaatggaggacaagcaatggggatgacattttgggcaccaaacataaacatattcagggatccaagatggggga |
100 |
Q |
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| T |
33423776 |
attggggttgaagcgagagcaatatacaatggaggacaagcaatggggatgacattttgggcaccaaacataaacatattcagggatccaagatggggga |
33423677 |
T |
|
| Q |
101 |
gaggacaagaaacagctggtgaagatcctatgatgacttctaactatgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423676 |
gaggacaagaaacagctggtgaagatcctatgatgacttctaactatgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaatt |
33423577 |
T |
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| Q |
201 |
gaggggacaccttcaagcttctgcttgttgcaaacatttcactgcctatg |
250 |
Q |
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| T |
33423576 |
gaggggacaccttcaagcttctgcttgttgcaaacatttcactgcctatg |
33423527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 25928436 - 25928229
Alignment:
| Q |
46 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
145 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| ||| || | |
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| T |
25928436 |
gggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagt |
25928337 |
T |
|
| Q |
146 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaattgagggga---caccttcaagcttctgcttgttgcaaacatttcac |
242 |
Q |
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||| |||||||||||| |||||||||||||| ||||| ||| |||| || ||| ||| ||| | ||| ||||||||||||||||||||||||| || |
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| T |
25928336 |
atggtgtttcctatgtaagaggacttcaaggagattcctttgaaggtggaaaactgattggagatcgtcttaaagcttctgcttgttgcaaacattttac |
25928237 |
T |
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| Q |
243 |
tgcctatg |
250 |
Q |
| |
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|||||||| |
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| T |
25928236 |
tgcctatg |
25928229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 25887990 - 25887783
Alignment:
| Q |
46 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
145 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || | | ||| || | |
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| T |
25887990 |
gggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagt |
25887891 |
T |
|
| Q |
146 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaattga---ggggacaccttcaagcttctgcttgttgcaaacatttcac |
242 |
Q |
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||| |||||||||||| |||||||||||||||||||| ||| |||| || ||| ||| | || | ||| |||||||||||||||||||||| || || |
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| T |
25887890 |
atggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttac |
25887791 |
T |
|
| Q |
243 |
tgcctatg |
250 |
Q |
| |
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|||||||| |
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| T |
25887790 |
tgcctatg |
25887783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 25910597 - 25910390
Alignment:
| Q |
46 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
145 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || | | ||| || | |
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| T |
25910597 |
gggatgaatttttgggcaccaaacataaacatattcagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagt |
25910498 |
T |
|
| Q |
146 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaattga---ggggacaccttcaagcttctgcttgttgcaaacatttcac |
242 |
Q |
| |
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||| |||||||||||| |||||||||||||||||||| ||| |||| || ||| ||| | || | ||| |||||||||||||||||||||| || || |
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| T |
25910497 |
atggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttac |
25910398 |
T |
|
| Q |
243 |
tgcctatg |
250 |
Q |
| |
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|||||||| |
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|
| T |
25910397 |
tgcctatg |
25910390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 25957164 - 25957330
Alignment:
| Q |
25 |
tacaatggaggacaagcaatggggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaag |
124 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
25957164 |
tacaatgctggacaagcagaggggatgacattttgggcaccaaacataaacatatttagggacccaagatggggaagagggcaagagacagctggtgaag |
25957263 |
T |
|
| Q |
125 |
atcctatgatgacttctaactatgctgtttcctatgttagaggacttcaaggtgattcttttcaagg |
191 |
Q |
| |
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||||| || | | | | || ||||||||||||| ||| ||||| |||||||||||||| ||| |||| |
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| T |
25957264 |
atcctttggtaagtgcaaagtatgctgtttcctttgtgagaggtcttcaaggtgattcctttgaagg |
25957330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 1370274 - 1370199
Alignment:
| Q |
50 |
tgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaaga |
125 |
Q |
| |
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|||||| |||| |||||||||| ||||||||||| |||||||||||||| || |||||||||||| | |||||||| |
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| T |
1370274 |
tgacatattggtcaccaaacattaacatattcagagatccaagatggggaaggggacaagaaacaccaggtgaaga |
1370199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 37610209 - 37610271
Alignment:
| Q |
52 |
acattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaaca |
114 |
Q |
| |
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|||| |||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
37610209 |
acatattggtcaccaaacattaacatatttagggatccaagatggggaagaggtcaagaaaca |
37610271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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