View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_low_19 (Length: 231)
Name: NF14584_low_19
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 31918679 - 31918800
Alignment:
| Q |
97 |
aaccaaatatacacgagccccacgtgttctcgtaattccttccgctcagtctcccccaggcactgaaatcaaaagatggaaaacagaacgaacgagaaag |
196 |
Q |
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| T |
31918679 |
aaccaaatatacatgagcctcacgtgttctcgtaattccttcctctcagtctcccccaggcactgaaatcaaaagatggaaaacagaacaaacgagaaag |
31918778 |
T |
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| Q |
197 |
cttcatcactaagatggaaaat |
218 |
Q |
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| T |
31918779 |
cttcatcgctaagatggaaaat |
31918800 |
T |
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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 31917709 - 31917805
Alignment:
| Q |
10 |
ccaagaatatgcgaacacgatttacatatttaatcctcaacaaaagttccacagctgtaaaaaataattttggttcctccaaaatgaaaccaaatat |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31917709 |
ccaaaaatatgcgaacacgatttacatatttaatcctcaacaaaaattccacagctgtaaaaattaattttggttcctccaaaatgaaaccaaatat |
31917805 |
T |
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