View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14584_low_2 (Length: 550)
Name: NF14584_low_2
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14584_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 31459893 - 31459542
Alignment:
| Q |
16 |
agagacacctcggtcaaattaatacacaaaagaccaacaacgtcacctttaacctaaagcttttctcaccgccacagaagagaggaacataggtattgta |
115 |
Q |
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| T |
31459893 |
agagaaacctcggtcgaattaatacacaaaagaccaacaacgtcacctttaacctaaagcttctctcaccgccacagaagagaggaacataggtattgta |
31459794 |
T |
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| Q |
116 |
ttcaccccgactcctagttttaattgaagtttcaaactgtaaactttgacataataacgatggtcgaccaaacttacaacgaactgaaacattaatttca |
215 |
Q |
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| T |
31459793 |
ttcaccccgactcctagttttaattgaagtttcaaactgtaaactttgacatgataacgatggtcgaccaaacttacaacgaactgaaacattaatttca |
31459694 |
T |
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| Q |
216 |
acaaaataacggtgcccacttgattttgttcaacccaccgtgaaaaaagtgtatatccctnnnnnnnnttagtaagtgaatcattgaattgatgagagca |
315 |
Q |
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| T |
31459693 |
acaaaataatggtgcccacttgattttgttcaacccaccgtgaaaaaagtgtatatctct-aaaaaaattagtaagtgaatcattgaattgatgagagca |
31459595 |
T |
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| Q |
316 |
atgatctttttcattcgttttgtctacggaacccatgcgtcacattatgtcac |
368 |
Q |
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| T |
31459594 |
atgatctttttcattcgttttgtctacgcaacccatgcgtcacattttgtcac |
31459542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 382 - 532
Target Start/End: Complemental strand, 31458691 - 31458541
Alignment:
| Q |
382 |
aatcatttaagcgcacgcataaaacaatacacatcatttaactatttatataacactgttttgtgacggtaaccaaacaaatgttcctcctttcaattgg |
481 |
Q |
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| T |
31458691 |
aatcatttaaacgcacgcataaaacaatacacatcatttaactatttatataacactgttttgtgacggtaaccaaacaagtgttcctcctttcaattgg |
31458592 |
T |
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| Q |
482 |
acctctctaatgatttttaacattaacttaatcacacaagtaccgtaaata |
532 |
Q |
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| T |
31458591 |
acctctctaatgatttttaacattaacttaatcacacaagtactgtaaata |
31458541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 31472128 - 31472058
Alignment:
| Q |
295 |
atcattgaattgatgagagcaatgatctttttcattcgttttgtctacggaacccatgcgtcacattatgtcac |
368 |
Q |
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| T |
31472128 |
atcattgaattgatgagggcaatgatctttttcat---tttgttttatggaacccatgcgtcacattttgtcac |
31472058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 31472299 - 31472246
Alignment:
| Q |
79 |
tctcaccgccacagaagagaggaacataggtattgtattcaccccgactcctag |
132 |
Q |
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| T |
31472299 |
tctcaccaccacagaagagaggatcgtaggaattgttttcaccccgactcctag |
31472246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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